Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq3865 820 0.0 seq2255 598 5e-166 seq292 98.7 1e-15 >seq3865 Length=1303 Score = 820 bits (908), Expect = 0.0 Identities = 779/993 (78%), Gaps = 2/993 (0%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 ||||| |||||| | |||||||| | || ||| | ||| |||||||||| ||||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTT-ATTACTGCGTTCGTTGCTGCTCC 160690 ||||| || | || ||||||| |||| || || | || |||||||| ||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAACA-TCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || ||||||||||||||||||||||| ||| ||||||| | | || || ||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810 |||||| |||||||| || | ||| |||| ||||| |||||| | ||||||||||| | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT 160870 ||||||||||||||| | || || ||| | ||||| ||||||||||||||| | |||| Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 160871 ATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCG 160930 | |||||| | | || | | ||||||||||||||| || |||||| | || | ||| Sbjct 579 TTGCCACTTCTTATTAGGTGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTCCG 638 Query 160931 CCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGC 160990 | || ||||| || |||||| || || || |||||||| ||||| ||||| | ||| Sbjct 639 TTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 698 Query 160991 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTAT 161050 ||| ||| | |||| ||| ||||||||||||| |||||||| |||||||| | ||||| Sbjct 699 AGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTAT 758 Query 161051 CTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCC 161110 |||||||| |||||||||||| | || ||||| || |||||||||||||| |||||||| Sbjct 759 TTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACCC 818 Query 161111 CTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGG 161170 ||||||||||| |||||||||||||| || ||||||||| | ||||| |||||||| || Sbjct 819 ATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACGG 878 Query 161171 TTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGG 161230 ||| | ||||| ||||| | | |||||||| ||||| ||||| || ||| ||| Sbjct 879 TTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTGG 938 Query 161231 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGG 161290 |||| || |||||||| ||||| || ||||||||||| |||||||| |||||||| || Sbjct 939 TTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTGG 998 Query 161291 TCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGC 161350 ||| | || |||||||||||||| ||||||||||| ||||| || ||||||||| | || Sbjct 999 TCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 1058 Query 161351 AGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAA 161410 || |||||||| ||||||||||||||||||| | ||| | || || ||||| ||||| Sbjct 1059 TGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCAA 1118 Query 161411 CCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACAC 161470 ||| ||||| |||||||||||||| || | | || ||| || || | ||||| Sbjct 1119 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACAC 1178 Query 161471 CTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGC 161530 ||||||||| | | || ||||||||| | |||||||||||||||||||| ||||| || Sbjct 1179 TTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGC 1238 Query 161531 TCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 |||||||||||||| || | ||| ||| ||| Sbjct 1239 GCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 598 bits (662), Expect = 5e-166 Identities = 755/1030 (73%), Gaps = 8/1030 (1%) Strand=Plus/Plus Query 163884 TGGTTCGATGTCCTGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 163943 |||||||||| | ||||||||| | | ||| || || || || || |||||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 163944 GGATTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACG 164003 |||||| | || || || |||||| | ||| | ||||| ||| | |||||||| || Sbjct 381 GGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACT 440 Query 164004 TTTGTTACCAGTTGGTACACCCACGGTCTCGCGTCTAGTTACCTTGAGGGTGCTAATTTC 164063 |||||||| ||||||||| ||||| | || || |||| | || ||| ||| ||| Sbjct 441 TTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 500 Query 164064 CTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TG 164122 | || || ||||| || || || || || |||| ||| ||| || || | ||| || Sbjct 501 TTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATG 559 Query 164123 GGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTT 164182 ||||||||| |||| || ||||| | | ||||| |||||||| || | |||||||| Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTT 619 Query 164183 TGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGC 164242 | | || || ||||| || || | | | || ||||||||| | || || |||||||| || Sbjct 620 TATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGC 679 Query 164243 ACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTT 164302 |||| || | ||||| ||||| |||||||| ||||||| ||| |||||||| || Sbjct 680 ACGTTCAGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTATT 739 Query 164303 --TGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCG 164360 ||| |||||| | || |||||| | || ||||| ||||||||||||| || Sbjct 740 CACTTCA--GTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGT 797 Query 164361 TTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACA 164420 ||||| || || || |||||| | ||| |||| ||| |||| || ||||| |||||||| Sbjct 798 TTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACG 857 Query 164421 CTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCT 164480 || ||||| ||||| |||||||||||||| || | | |||| |||| | | |||||| Sbjct 858 CTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCT 917 Query 164481 ATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTC 164540 ||||| |||||||| || || || || || |||||||| ||||| | || || ||| Sbjct 918 ATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATTC 977 Query 164541 AAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTC 164600 |||||| | || ||||||| ||||| || ||||| ||||| ||||| ||||| ||| Sbjct 978 CGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTTC 1037 Query 164601 TGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTC 164660 |||||||| || || ||| |||||||| || || |||||||| |||||||| ||| | Sbjct 1038 TGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTTA 1097 Query 164661 TTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAAT 164720 || || || || | || | |||| |||||||| | || ||| | ||| | || Sbjct 1098 TTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAAC 1157 Query 164721 CTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAG 164780 | |||||||| || || || || || || ||| | |||||||| || || || || || Sbjct 1158 TTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGAA 1217 Query 164781 ACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTA 164840 |||||||| || || |||||||| || |||||||| | ||||| ||||||||| | | Sbjct 1218 ACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCAA 1277 Query 164841 GACCAGCCACACGAATCGTTT-GTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACT 164899 ||||| || || ||| ||||| ||||| ||||| ||||| | || | |||||||| || Sbjct 1278 GACCAACCGCATGAA-CGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 1336 Query 164900 CTAAACTTTT 164909 ||| |||| Sbjct 1337 ATAATTTTTT 1346 >seq292 Length=128933 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 160777 CTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAAT 160836 |||| ||||| |||||| | ||||||||||| | ||||||||||||||| | || |||| Sbjct 40779 CTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCATCTTTAGACGAAT 40720 Query 160837 GGCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTC 160880 || | ||||| |||||||| ||||| | ||||| | |||||| Sbjct 40719 GGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTTC 40676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559299320456800