Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq915 98.7 1e-15 seq596 89.7 7e-13 seq1214 84.2 3e-11 >seq915 Length=45826 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 162455 TCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAA 162514 |||||||||| |||| |||||| || || || || |||||| ||| |||| || | Sbjct 19849 TCTACCAAGCCTCCACCTCTGAGCTGTACGGCCTGGTGCAGGAGGTACCGCAGAGCGAGA 19908 Query 162515 CCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCA 162574 |||| || | || || || ||||| || || || || || || || ||||||||||||| Sbjct 19909 CCACGCCCTTCTACCCCCGCTCCCCCTACGGTGTCGCCAAGCTGTACGGGTTCTGGATCA 19968 Query 162575 TCAAAAACTACAGG 162588 |||| ||||||||| Sbjct 19969 TCAAGAACTACAGG 19982 >seq596 Length=73847 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 162455 TCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAA 162514 |||| || || |||| |||||| || || || || |||||| || |||| || | Sbjct 24836 TCTATCAGGCCTCCACCTCTGAGCTGTACGGCCTGGTGCAGGAGGTGCCGCAGAGCGAGA 24777 Query 162515 CCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCA 162574 |||| || | || || || ||||| ||||| ||||| || || || || |||||||||| Sbjct 24776 CCACCCCCTTCTACCCCCGCTCCCCCTATGGTGTTGCCAAGCTGTACGGCTTCTGGATCA 24717 Query 162575 TCAAAAACTACAGG 162588 |||| ||||||||| Sbjct 24716 TCAAGAACTACAGG 24703 >seq1214 Length=28590 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 162455 TCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAA 162514 |||| || || |||| |||||| || || || || |||||| || |||| || | Sbjct 3580 TCTATCAGGCATCCACCTCTGAGCTGTACGGCCTGGTGCAGGAGGTGCCGCAGAGCGAGA 3521 Query 162515 CCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCA 162574 |||| || | || || || ||||| || || ||||| || || || || |||||||||| Sbjct 3520 CCACCCCCTTCTACCCCCGCTCCCCCTACGGTGTTGCCAAGCTGTACGGCTTCTGGATCA 3461 Query 162575 TCAAAAACTACAGG 162588 |||| ||||||||| Sbjct 3460 TCAAGAACTACAGG 3447 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 162455 TCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAA 162514 |||| || || |||| |||||| || || || || |||||| || |||| || | Sbjct 10386 TCTATCAGGCCTCCACCTCTGAGCTGTACGGCCTGGTGCAGGAGGTGCCGCAGAGCGAGA 10327 Query 162515 CCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCA 162574 |||| || | || || || ||||| || || ||||| || || || || |||||||||| Sbjct 10326 CCACCCCCTTCTACCCCCGCTCCCCCTACGGTGTTGCCAAGCTGTACGGCTTCTGGATCA 10267 Query 162575 TCAAAAACTACAGG 162588 |||| ||||||||| Sbjct 10266 TCAAGAACTACAGG 10253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691423745429520