Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq4701 102 8e-20 seq4842 77.0 3e-12 >seq4701 Length=5848 Score = 102 bits (112), Expect = 8e-20 Identities = 140/193 (73%), Gaps = 16/193 (8%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||| |||||| || ||||||||||| Sbjct 2358 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGC 2417 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC------ 114 | |||||| | |||| | | |||||||| |||| || |||||||| ||||| Sbjct 2418 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATCTCTGAATGGGGGAACCCACCTAG 2477 Query 115 GATATATTGGAGATATATCAT-----AACGCTAG--GCGTTAGGCGAACGTGGGGAACTG 167 |||| | || ||| | | | | ||| || |||||||| ||||||||| Sbjct 2478 GATAACCT--AGGTATCTTGTACTGAATCCATAGGTGCAAGAGGCGAACCAGGGGAACTG 2535 Query 168 AAACATCTAAGTA 180 ||||||||||||| Sbjct 2536 AAACATCTAAGTA 2548 >seq4842 Length=5562 Score = 77.0 bits (84), Expect = 3e-12 Identities = 131/180 (73%), Gaps = 10/180 (6%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGT-GATAAGCTGCGAAAAGCTAC 64 |||||||| ||||||| ||| ||| ||||||||| || |||| | |||| | ||| | Sbjct 838 ACGGTGGAGACCTAGGCACTCAGAGACGAAGAAGGGCGCAGATAC-CGGCGATACGCTTC 896 Query 65 GGGGAT-TGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATAT-ATT 122 ||||| ||||| | | | |||||||| |||| || ||| |||||||| ||| | | Sbjct 897 GGGGAGCTGGCA-ACAAGCTTTGATCCGAAGATTCCCAAATAGGGCAACCTCATAGGACT 955 Query 123 GGAGATATA--TCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||||| ||||| | |||| |||| ||| | ||||||||||||||||||| Sbjct 956 ACCTATATAATTCATA--GTTAGGTAAGAGGC-AACCCAGTGAACTGAAACATCTAAGTA 1012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476753167959