Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq4701 224 9e-57 seq4842 84.2 2e-14 >seq4701 Length=5848 Score = 224 bits (248), Expect = 9e-57 Identities = 133/139 (96%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 20 GAGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 79 || ||| || |||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 4050 GAAGGATTTACTCCGTAAGCTCTGGCTGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 4109 Query 80 TAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGT 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4110 TAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGT 4169 Query 140 GCCGGAAGGTTAATTGATG 158 ||||||||||||||||||| Sbjct 4170 GCCGGAAGGTTAATTGATG 4188 >seq4842 Length=5562 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || ||| |||| ||||||||||| |||||||||| ||| ||||| || Sbjct 2589 GGTCGCAGTGACCCGGCCCAGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 2648 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | ||| ||| |||||||||||| ||||||||||||||| Sbjct 2649 AAGACAATATATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 2694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476753167959