Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq4701 706 0.0 seq4842 165 2e-38 seq4494 98.7 3e-18 >seq4701 Length=5848 Score = 706 bits (782), Expect = 0.0 Identities = 412/426 (97%), Gaps = 0/426 (0%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4376 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 4317 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4316 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 4257 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 4256 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGC 4197 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4196 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 4137 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4136 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 4077 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 360 || |||||||||||| || ||||||||||| |||||||||||||||||||||||||| Sbjct 4076 AGCCAGAGCTTACGGAGTAAATCCTTCACCCTAGCCGGCGCACCTTCTCCCGAAGTTACG 4017 Query 361 GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 420 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 4016 GTGCCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 3957 Query 421 AACCAC 426 ||||| Sbjct 3956 GACCAC 3951 >seq4842 Length=5562 Score = 165 bits (182), Expect = 2e-38 Identities = 224/311 (72%), Gaps = 26/311 (8%) Strand=Plus/Minus Query 118 ACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCG 177 ||||||||| |||||| |||||| |||||||| |||||||||||| || |||||| Sbjct 2774 ACCTTAGGATCGTTATAGTTACGACCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTCCTA 2715 Query 178 T----TAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACG 233 ||| ||||| | ||||||||||||||| |||||||||||| ||| ||| Sbjct 2714 CAAAGTAG-TAACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATA 2656 Query 234 TCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATC 293 | ||| || ||||| ||| |||||||||| ||||||||||| |||| ||| | Sbjct 2655 TTGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCGGGTCAC 2596 Query 294 TTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGA 353 | ||||| || || || | |||| ||||| |||||| |||| Sbjct 2595 TGCGACC--CAAGAAATT--------AATCCT----------GGGCGCCCCTTCTTCCGA 2556 Query 354 AGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTC 413 |||||||| ||| |||||| |||||||| |||||||||| || ||||||||||| Sbjct 2555 AGTTACGGGGCCAGTTTGCCGAGTTCCTTAGAGAGAGTTCTCTCGCGCCCCTTGGTATTC 2496 Query 414 TCTACCCAACC 424 |||| |||||| Sbjct 2495 TCTA-CCAACC 2486 Score = 98.7 bits (108), Expect = 3e-18 Identities = 86/106 (81%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 13 GCATCTTCACAGCG-ATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||| | | || ||||||| ||||||| ||||||||||| ||||| Sbjct 4075 GCATCTTCACGGGACAAGTCTATTTCACCGAGTCTCTCTCCGAGACAGCGCCCAGATCGT 4016 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 117 |||||| ||||||||||||| ||||||| |||||| |||||||||| Sbjct 4015 TACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCT 3970 >seq4494 Length=6333 Score = 98.7 bits (108), Expect = 3e-18 Identities = 110/143 (77%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCA-TCGT 71 |||||| ||| |||||||| ||||| || | | |||||||| ||| || |||| Sbjct 3184 GCATCTGCACGAAGATTTCAAATTCACAGATCCCATGACTGAGACAGC-CCGACAGTCGT 3242 Query 72 TACGCCATTCGTGCA-GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 | ||||||| |||| || || | ||| || |||||||||||||||||||||||| || Sbjct 3243 TCAGCCATTCATGCAAGGACGCCAATTAAACGTCAAGGAATTTCGCTACCTTAGGACGGT 3302 Query 131 TATTGTTACGGCCGCCGTTTACC 153 || ||||| |||||||||| || Sbjct 3303 TAGAGTTACCGCCGCCGTTTGCC 3325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260672167488