Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq4701 282 9e-74 seq4842 190 4e-46 seq4494 89.7 1e-15 >seq4701 Length=5848 Score = 282 bits (312), Expect = 9e-74 Identities = 292/389 (75%), Gaps = 25/389 (6%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | |||| ||||||||| |||||| || ||||||| ||| Sbjct 4370 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 4311 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 4310 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 4251 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | | |||||| |||| ||||| Sbjct 4250 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGCGCTAAC 4191 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | |||||||||| ||||||||||||||||| ||||||| || ||| || | Sbjct 4190 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 4131 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT 300 | ||||| |||||||||| ||||||||||| ||||| | ||| || || | || Sbjct 4130 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCAGCCAG 4071 Query 301 AG-------------------------ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCA 335 || | ||| | ||||||||| ||||||||| | || Sbjct 4070 AGCTTACGGAGTAAATCCTTCACCCTAGCCGGCGCACCTTCTCCCGAAGTTACGGTGCCA 4011 Query 336 TTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||||||| |||||||| || ||||||| Sbjct 4010 TTTTGCCTAGTTCCTTCACCCGAGTTCTC 3982 >seq4842 Length=5562 Score = 190 bits (210), Expect = 4e-46 Identities = 202/265 (76%), Gaps = 16/265 (6%) Strand=Plus/Minus Query 112 ACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-- 169 ||||||||| ||||||||||||| |||||||| || ||||||| || | ||||| Sbjct 2774 ACCTTAGGATCGTTATAGTTACGACCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTCCTA 2715 Query 170 -ATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACAT 228 | | |||| | |||||||||||| |||| |||||||||||||| || ||| || Sbjct 2714 CAAAGTAGTAACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATAT 2655 Query 229 CGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCT 288 ||||| |||||| || || ||||||||||||||||||||||||| |||||| || || Sbjct 2654 TGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCGGGTCACT 2595 Query 289 GCGGCCTGTCATAGACA---------GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTT 339 ||| || || ||| | ||| |||||||| || ||||||||||| || ||| Sbjct 2594 GCGACC---CA-AGAAATTAATCCTGGGCGCCCCTTCTTCCGAAGTTACGGGGCCAGTTT 2539 Query 340 GCCGAGTTCCTTAACAATAGTTCTC 364 ||||||||||||| | ||||||| Sbjct 2538 GCCGAGTTCCTTAGAGAGAGTTCTC 2514 Score = 111 bits (122), Expect = 3e-22 Identities = 90/107 (84%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTA--CAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||| |||| | | |||||||||||||| | ||||||| ||||| |||| Sbjct 4075 GCATCTTCAC-GGGACAAGTCTATTTCACCGAGTCTCTCTCCGAGACAGCGCCCAGATCG 4017 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCT 111 ||||||||||||||| ||||| ||||||| |||||| |||||||||| Sbjct 4016 TTACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCT 3970 >seq4494 Length=6333 Score = 89.7 bits (98), Expect = 1e-15 Identities = 104/139 (75%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||| ||| |||| ||| ||||| || | || |||||||| | | ||||| Sbjct 3184 GCATCTGCACGAAGATTTCAAATTCACAGATCCCATGACTGAGACAGCCCGACAGTCGTT 3243 Query 67 ACGCCTTTCGTGCG-GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 125 ||| ||| ||| || || | ||| || |||||||||||||||||||||||| ||| Sbjct 3244 CAGCCATTCATGCAAGGACGCCAATTAAACGTCAAGGAATTTCGCTACCTTAGGACGGTT 3303 Query 126 ATAGTTACGGCCGCCGTTT 144 | |||||| |||||||||| Sbjct 3304 AGAGTTACCGCCGCCGTTT 3322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062292283264