Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq4701 527 2e-147 seq6614 334 2e-89 >seq4701 Length=5848 Score = 527 bits (584), Expect = 2e-147 Identities = 419/499 (84%), Gaps = 7/499 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 1219 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1278 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||||||||||||||||||||||| |||||||| || || | || Sbjct 1279 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCTGGCCTTGACATGCTGAGAACTTTC 1338 Query 121 TAGAGATAGA--GGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 |||||| || ||| |||||||| || || ||||||| ||||||| ||||||| Sbjct 1339 CAGAGATGGATTGGTG---CCTTCGGGA-ACTCAGACACAGGTGCTGCATGGCTGTCGTC 1394 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 1395 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGTAACGAGCGCAACCCTTGTCCTTAGTT 1454 Query 239 GCCATCAT-TAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||| || | | ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1455 ACCAGCACCTCGGGTGGGCACTCTAAGGAGACTGCCGGTGACAAACCGGAGGAAGGTGGG 1514 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| |||||||| |||||| | ||||||||||||||||||||||| | Sbjct 1515 GATGACGTCAAGTCATCATGGCCCTTACGGCCAGGGCTACACACGTGCTACAATGGTCGG 1574 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 ||||||||| || || ||||||||| ||| ||||||||||| | || ||| |||| Sbjct 1575 TACAAAGGGTTGCCAAGCCGCGAGGTGGAGCTAATCCCATAAAACCGATCGTAGTCCGGA 1634 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGC 477 | | |||||||||||||||| ||||| |||||||||||||||||| ||||| ||| Sbjct 1635 TCGCAGTCTGCAACTCGACTGCGTGAAGTCGGAATCGCTAGTAATCGTGAATCAGAATGT 1694 Query 478 TACGGTGAATACGTTCCCG 496 |||||||||||||||||| Sbjct 1695 CACGGTGAATACGTTCCCG 1713 >seq6614 Length=2957 Score = 334 bits (370), Expect = 2e-89 Identities = 372/492 (76%), Gaps = 12/492 (2%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 1747 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATTATGTGGAT 1688 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||||||||||||||||||| ||||||| || || || ||| | Sbjct 1687 TAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACATGTCAAGAACCTTCCAGAAA 1628 Query 127 TAG-AGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGT 185 | | ||| | ||| |||| | || ||||||| ||||||| |||||||||||||| Sbjct 1627 TGGAAGGGTGCCCTAACGGGAGCTTGA-ACACAGGTGGTGCATGGCTGTCGTCAGCTCGT 1569 Query 186 GTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA 245 | |||| ||| |||||||| | ||||||||||||||| |||||||||| Sbjct 1568 GCGGTGACGTGTATAGTTAAGTCTCATAACGAGCGCAACCCTCGTCTTTAGTTGCCA--- 1512 Query 246 TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGT 305 || || |||||| ||||||| ||| || | ||||||||||| ||| ||||| Sbjct 1511 -----TTTGGTTCTCTAAAGAGACTGCCAGTG-TAAGCTGGAGGAAGGTGAGGATGACGT 1458 Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| ||| ||||||||||| |||||| ||||||| |||||||| |||| Sbjct 1457 CAAGTCAGCATGCCCCTTACACCCTGGGCTTCACACGTAATACAATGGTTGGGACAATCA 1398 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425 | ||||| |||||| | ||| ||| |||| ||||||||||||||||| | Sbjct 1397 GAAGCGATCTCGCGAGAGCTAGCGGATCTGTTAAACCCAACCTCAGTTCGGATTGTAGGC 1338 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGTG 484 ||||||||| ||| ||||||| ||||||||||||||||| ||||| || ||||| Sbjct 1337 TGCAACTCGCCTACATGAAGCCGGAATCGCTAGTAATCGCCAGTCAGCTATATGGCGGTG 1278 Query 485 AATACGTTCCCG 496 |||||||||||| Sbjct 1277 AATACGTTCCCG 1266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503847509440