Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq4842 194 3e-47 seq4701 170 4e-40 >seq4842 Length=5562 Score = 194 bits (214), Expect = 3e-47 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||| |||| |||||||||| ||||||| |||||| ||| ||||| |||| | Sbjct 4264 GACAGTTTCAGGTGGGCAGTTTGTTTGGGGCGAACGCCTCATAAAAGGTAACTGAGGTGT 4323 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 ||||| | ||||||| |||| ||||| || | |||| ||||||||||||| | | Sbjct 4324 GCAAAGGTTCCCTCAGTCTGGACGGAAATCAGACATTGAGTGTAAAGGCAAAAGGGAGCT 4383 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 ||||||| | ||| |||||| ||||||| |||||| ||| |||| ||||||| |||||| Sbjct 4384 TGACTGCAAGACCTACAAGTCGAGCAGGGGCGAAAGCCGGCCTTAGTGATCCGACGGTGC 4443 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 4444 CGTGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 4490 >seq4701 Length=5848 Score = 170 bits (188), Expect = 4e-40 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 136 ACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGAT 195 |||||||||||| ||||| ||||||||||||||| | | ||| | | ||||| || Sbjct 5085 ACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGTACGAAGGTGCGCTCAGACCGGTC 5144 Query 196 GGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTA 255 ||||| | || | ||| ||||||||||| | | |||||||||| || || ||| | Sbjct 5145 GGAAATCGGTCGTAGAGTATAAAGGCAAAAGCGCGCTTGACTGCGAGACAGACACGTCGA 5204 Query 256 GCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGA 315 ||||| |||||||| || |||| |||||||| ||| ||| |||||| |||| |||||| | Sbjct 5205 GCAGGTACGAAAGTAGGTCTTAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCTCAA 5264 Query 316 CGGATAAAAGCTACCCTGGGGATA 339 |||||||||| ||| | ||||||| Sbjct 5265 CGGATAAAAGGTACTCCGGGGATA 5288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982300394464