Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq4701 529 4e-148 seq6614 219 9e-55 >seq4701 Length=5848 Score = 529 bits (586), Expect = 4e-148 Identities = 339/367 (92%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 761 CTTTACAATCCGAAGACCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGCTTTCGCCC 704 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 703 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 644 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || Sbjct 643 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTAGGCCTTTACCCCA 584 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| ||| Sbjct 583 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATCCCCCACTT 524 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 |||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 523 TCTCCCTCAGGACGTATGCGGTATTAGCGCCCGTTTCCGGACGTTATCCCCCACTACCAG 464 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCTTCTCTCTA 360 ||||||||||||||||||||||||||||||||||| || |||||||| | || Sbjct 463 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTGAATCCAGGAGCAAGCTCCCTTCAT 404 Query 361 CCGCTCG 367 ||||||| Sbjct 403 CCGCTCG 397 >seq6614 Length=2957 Score = 219 bits (242), Expect = 9e-55 Identities = 235/309 (76%), Gaps = 14/309 (5%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| | | |||||||||||||||||| || ||||| |||||||||||| Sbjct 2208 CACGCGGCATTGCTTCG-TCAGGCTTTCGCCCATTGCGAAAAATTCCTCACTGCTGCCTC 2266 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| | Sbjct 2267 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCT 2326 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTA-CCTCACCAACTAGCTAATCCGACCTAGGCTCA 207 || |||||| ||||||| ||| ||| || | |||||||||||||| ||| | || | Sbjct 2327 ACTGATCGTGGCCTTGGGAGGCCGTTACCCCCTCCAACTAGCTAATCAGACGCAAGCCCC 2386 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTC-CCGTAGGACGTATGCGGTATTA 266 ||| | ||| | | | ||||| | || || |||| ||||||| Sbjct 2387 TCTATTGGCG-----------GTTATTCACCTTTCACTCCTCAGCTTTTATGGGGTATTA 2435 Query 267 GCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCG 326 || | |||||| || |||||||||| | | ||| || ||| || || |||| |||||| Sbjct 2436 GCAACAGTTTCCCAATGTTATCCCCCTCCAATAGGTAGGTTCTTACGCGTTACGCACCCG 2495 Query 327 TCCGCCGCT 335 | |||| || Sbjct 2496 TTCGCCACT 2504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071891309920