Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04-
26] 10,139 sequences; 120,364,444 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq4701 529 4e-148
seq6614 219 9e-55
>seq4701
Length=5848
Score = 529 bits (586), Expect = 4e-148
Identities = 339/367 (92%), Gaps = 2/367 (1%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 761 CTTTACAATCCGAAGACCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGCTTTCGCCC 704
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 644
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct 643 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTAGGCCTTTACCCCA 584
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| |||
Sbjct 583 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATCCCCCACTT 524
Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300
|||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 523 TCTCCCTCAGGACGTATGCGGTATTAGCGCCCGTTTCCGGACGTTATCCCCCACTACCAG 464
Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCTTCTCTCTA 360
||||||||||||||||||||||||||||||||||| || |||||||| | ||
Sbjct 463 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTGAATCCAGGAGCAAGCTCCCTTCAT 404
Query 361 CCGCTCG 367
|||||||
Sbjct 403 CCGCTCG 397
>seq6614
Length=2957
Score = 219 bits (242), Expect = 9e-55
Identities = 235/309 (76%), Gaps = 14/309 (5%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| | | |||||||||||||||||| || ||||| ||||||||||||
Sbjct 2208 CACGCGGCATTGCTTCG-TCAGGCTTTCGCCCATTGCGAAAAATTCCTCACTGCTGCCTC 2266
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct 2267 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCT 2326
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTA-CCTCACCAACTAGCTAATCCGACCTAGGCTCA 207
|| |||||| ||||||| ||| ||| || | |||||||||||||| ||| | || |
Sbjct 2327 ACTGATCGTGGCCTTGGGAGGCCGTTACCCCCTCCAACTAGCTAATCAGACGCAAGCCCC 2386
Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTC-CCGTAGGACGTATGCGGTATTA 266
||| | ||| | | | ||||| | || || |||| |||||||
Sbjct 2387 TCTATTGGCG-----------GTTATTCACCTTTCACTCCTCAGCTTTTATGGGGTATTA 2435
Query 267 GCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCG 326
|| | |||||| || |||||||||| | | ||| || ||| || || |||| ||||||
Sbjct 2436 GCAACAGTTTCCCAATGTTATCCCCCTCCAATAGGTAGGTTCTTACGCGTTACGCACCCG 2495
Query 327 TCCGCCGCT 335
| |||| ||
Sbjct 2496 TTCGCCACT 2504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071891309920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |