Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq4701 360 7e-97 seq4842 302 2e-79 seq663 77.0 1e-11 >seq4701 Length=5848 Score = 360 bits (398), Expect = 7e-97 Identities = 419/557 (75%), Gaps = 19/557 (3%) Strand=Plus/Minus Query 45 CACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCAT 103 |||||| || |||||||||||| | || |||||| | | | |||||||| | | Sbjct 3260 CACTTCTGGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAA 3201 Query 104 CCAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAG 162 |||||||||||| || || || ||| | | |||| |||||||| ||||| |||| Sbjct 3200 ACAGTGCTCTACCCCCCAGAGTGATACATGAGGCGCT--ACCTAAATAGCTTTCGAGGAG 3143 Query 163 AACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGT 222 ||||||||||| | || |||||| ||||||||| || ||||||| |||||||||| | Sbjct 3142 AACCAGCTATCTCCGAGCTTGATTAGCCTTTCACTCCGATCCACAAGTCATCCCCTACCT 3083 Query 223 TTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATG 282 ||||||| |||||||||||||||||| | || ||||| ||||||||||| |||| Sbjct 3082 TTTCAACGGGAGTGGGTTCGGTCCTCCAGTCAGTGTTACCTAACCTTCAACCTGCTCATG 3023 Query 283 GATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCT 342 |||||||| | | ||||||||| | | || ||| | |||||||||| |||||||| Sbjct 3022 GATAGATCGCCCGGTTTCGGGTCTATACCCAGCGACT-AAACGCCCTATTAAGACTCGCT 2964 Query 343 TTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCAT 402 ||||||||| |||||| | || |||||| || || || || || |||| | | ||| Sbjct 2963 TTCGCTACGCCTACCCTATAC-GGTTAAGCTTGCCACTGAA-TATAAGTCGCTGACCCAT 2906 Query 403 TCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTA 462 | | ||||||| |||| ||| |||||| || | ||||| || | ||||| Sbjct 2905 TATACAAAAGGTACGCAGTC-------ACCTAA----CAAGTAGGCTCCCACTGCTTGTA 2857 Query 463 GGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTC 521 ||| | |||||||||| |||||||||||||| | | ||||| |||||| |||||||||| Sbjct 2856 CGCATACGGTTTCAGGTTCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTC 2797 Query 522 ACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCA 581 |||||||| || | |||||||||| || ||||||||| ||| || ||||||| ||| Sbjct 2796 ACGGTACTGGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCA 2737 Query 582 GATTCACACGAAATTTC 598 |||| || || |||| Sbjct 2736 TGTTCAGACAAAGTTTC 2720 >seq4842 Length=5562 Score = 302 bits (334), Expect = 2e-79 Identities = 352/470 (75%), Gaps = 20/470 (4%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||| ||||||| | | |||| |||||| |||| Sbjct 1699 CGCTGCGCCTCAACGCATTTCGGGGAGATCCAGCTAGCTCCGAGTTCGATTGGAATTTCT 1640 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 ||||||| ||||| |||||| | | |||||||| | || ||||||| ||||||| || Sbjct 1639 CCCCTATTCACAGCTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGACCTCCACTTGG 1580 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGT 313 | |||||| |||||| |||| ||||| ||||||||| | |||||||| | || Sbjct 1579 TGTTACCCAAGCTTCATCCTGGCCATGAATAGATCACCCGGGTTCGGGTCCATAAGAAGT 1520 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCA---CACGGGTTAA 370 | || ||||||||||||| |||| ||||||||| |||| || | || |||| Sbjct 1519 GACA---ATACGCCCTATTCAGACTTGCTTTCGCTTGGGCT-CCGGATTTTACTCCTTAA 1464 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || | | ||| | | || |||| |||||||||||||| |||||||| |||||| Sbjct 1463 CC-CTAGCCACTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCACCCTCA 1405 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 | |||| ||||| || | |||| ||| | ||||||| || ||||||||| Sbjct 1404 ATATAAA---------GGCTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCAC 1354 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 ||||| ||||||| ||||||||||||||||| |||||| | ||||||||||||| | Sbjct 1353 TCCCCAACAGGGGTTCTTTTCACCTTTCCCTCGTGGTACTATTTCGCTATCGGTCACTCA 1294 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| |||| |||||||| | |||||||||| |||||| Sbjct 1293 GGAGTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGATTTCA 1244 >seq663 Length=40362 Score = 77.0 bits (84), Expect = 1e-11 Identities = 62/75 (83%), Gaps = 4/75 (5%) Strand=Plus/Plus Query 491 CCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAG 550 |||||| ||| ||||||| |||||||||||||||||||| ||||||||||| | | Sbjct 26401 CCCCGCGAGG----CTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGG 26456 Query 551 GAGTATTTAGGCTTA 565 ||||||||| |||| Sbjct 26457 CAGTATTTAGCCTTA 26471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817415713536