Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq4842 221 3e-55 seq4701 187 6e-45 >seq4842 Length=5562 Score = 221 bits (244), Expect = 3e-55 Identities = 297/406 (73%), Gaps = 13/406 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||| ||||| ||||||| | |||||| || |||| |||| ||| ||| | Sbjct 2237 CGACGACGCCATTCGGCCTAGTCTTAGGTCCTGACTAACCCCCCATGGACGAACCTAGTG 2178 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 2177 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 2118 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 |||||||||| ||| || |||| | | || | || | | ||||||| || Sbjct 2117 ACATTCTCACTTCCGCTTCG--TCCATCCC-CACTTACGTGAAAACTTCACCCGAGAGCG 2061 Query 178 GA-CGCTCCCCTACCCAACC----ACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGC 232 || |||||||||||| | || | | ||| | |||||||||||| | | ||||| | Sbjct 2060 GAACGCTCCCCTACCTACCCTTTTATAAAGGATATCACAGCTTCGGCAGGTCACTTAGTC 2001 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 || || |||||||||||| | | ||| ||||||||||||||||||||||||| || | Sbjct 2000 CCGGC--CATTATCGGCGCAAGAACGCTTTACCAGTGAGCTATTACGCACTCTTTGAAAG 1943 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 | |||||||| |||| ||| |||||||||| | ||| |||||||||| ||||| | Sbjct 1942 GTAGCTGCTTCTAAGCGAACTTCCTGGTTGTTTCAGCATTCTCACATCCTTTACCACTTA 1883 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || |||| |||||||||||||||| ||||||||||||||||||||| Sbjct 1882 GTGACCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCT 1837 >seq4701 Length=5848 Score = 187 bits (206), Expect = 6e-45 Identities = 288/403 (71%), Gaps = 10/403 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || |||||||||||||| |||||| |||| | | || ||| | | Sbjct 3705 CGACTACGCTTTTCAGCCTCGCCTTAGGAACCGACTAACCCTGCGTCGATTAACGTTGCG 3646 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATT--CCCACCCGTCACACGCTACTCATGCC 118 | ||||||||||| |||||| | | || | ||||| | || |||||||| | Sbjct 3645 CAGGAACCCTTGGTCTTTCGGCGTGGGTGTTTTTCACACCCATTGT-CGTTACTCATGTC 3587 Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176 |||||| |||| | || | ||||| || | || | || |||||| || ||| Sbjct 3586 AGCATTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCACAGGCTTACA 3529 Query 177 CGACGCTCCCCTACCCAACCACACAGGTTGC---CACAGCTTCGGCGGATAACTTAAGCC 233 ||||||| ||||| ||| | || | | ||||||||| | | || |||| Sbjct 3528 GAACGCTCCTCTACCGCGTCACTTACGTGACACCCGCAGCTTCGGTGTGTGGTTTGAGCC 3469 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| |||| Sbjct 3468 CCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGG 3409 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| ||||||||||||| | |||||| || ||||||| ||| ||||| | Sbjct 3408 TGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTTTACCACTTAA 3349 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 ||| |||| ||| ||||||||| | |||||| ||||||||| Sbjct 3348 CCACAACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCT 3306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177480603136