Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq4701 192 5e-47 seq6614 82.4 6e-14 >seq4701 Length=5848 Score = 192 bits (212), Expect = 5e-47 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | |||||||||||||| ||| ||||||||||||| ||||||| Sbjct 1652 TCGAGTTGCAGACTGCGATCCGGACTACGATCGGTTTTATGGGATTAGCTCCACCTCGCG 1593 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | ||||| |||| |||| ||||||||| ||||||| |||||| || ||||||||| Sbjct 1592 GCTTGGCAACCCTTTGTACCGACCATTGTAGCACGTGTGTAGCCCTGGCCGTAAGGGCCA 1533 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||||||||||||||||||||||||| Sbjct 1532 TGATGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 1492 >seq6614 Length=2957 Score = 82.4 bits (90), Expect = 6e-14 Identities = 111/154 (72%), Gaps = 8/154 (5%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | | ||| ||| ||| | |||||| Sbjct 1329 CGAGTTGCAGCCTACAATCCGAACTGAGGTTGGGTTTAACAGATCCGCTAGCTCTCGCGA 1388 Query 62 GTTGGCGGCCCTCTGTATGT----ACCATTGTATGACGTGTGAAGCCCTACCCATAAGGG 117 | | || |||| ||| |||||||||| ||||||||||||| |||||| Sbjct 1389 GATCGCT----TCTGATTGTCCCAACCATTGTATTACGTGTGAAGCCCAGGGTGTAAGGG 1444 Query 118 CCATGAGGACTTGACGTCATCCCCACCTTCCTCC 151 |||| ||||||||||||||| ||||||||||| Sbjct 1445 GCATGCTGACTTGACGTCATCCTCACCTTCCTCC 1478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415959139830