Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq6614 311 3e-82 seq4701 302 1e-79 >seq6614 Length=2957 Score = 311 bits (344), Expect = 3e-82 Identities = 277/343 (81%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGG-TAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||| || ||||||| | ||||||| |||||||||||| | Sbjct 2379 GCGTCTGATTAGCTAGTTGGAGGGGGTAACGGCCTCCCAAGGCCACGATCAGTAGCTGGT 2320 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 2319 CTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 2260 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||| ||||| || | |||||||| ||||||||| | ||||| |||||||| || || Sbjct 2259 CAGTGAGGAATTTTTCGCAATGGGCGAAAGCCTGACGAAGCAATGCCGCGTGCAGGAAGA 2200 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAA--TGACGGTACTTGAGGAGG 397 |||| |||| ||||| || | |||| ||||| | |||||||| |||||| Sbjct 2199 CGGCCCGTGGGTTGTAAACTGCTTTTCTCAGAGAAGAAGATCTGACGGTATCTGAGGAAT 2140 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| |||||||||| |||||||||||||||||||||| |||| || |||||| |||| Sbjct 2139 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTCCG 2080 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| | | ||||| Sbjct 2079 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTCGTAAAGTC 2038 >seq4701 Length=5848 Score = 302 bits (334), Expect = 1e-79 Identities = 278/354 (79%), Gaps = 26/354 (7%) Strand=Plus/Plus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| ||||||||||||||| ||||| ||| |||||||||||||||| ||| | | ||| Sbjct 566 GTCGGATTAGCTAGTTGGTGGGGTAAAGGCCTACCAAGGCGACGATCCGTAACTGGTCTG 625 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| | |||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 626 AGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAG 685 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||||||| ||||||||| |||||||||| |||| | |||||||| | || ||||| Sbjct 686 TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGG 745 Query 343 CCTTCGGGTCGTAAAGCTCT----GTCCTCA--------AGGAAGATAA----------- 379 |||||| | ||||||| || || | || ||| ||| Sbjct 746 TCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCAGTAAGTTAATACCTTGCTGT 805 Query 380 --TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 ||||| ||| || |||| |||||||||| |||||||||||||||||||||||| Sbjct 806 TTTGACGTTACCAACAGAATAAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACG 865 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 |||| || ||||||| |||||||||| |||||||||| | |||||||||||| Sbjct 866 AAGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCGCGTAGGTGGTT 918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497448158336