Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq4701 372 7e-101 seq6614 293 6e-77 >seq4701 Length=5848 Score = 372 bits (412), Expect = 7e-101 Identities = 321/396 (81%), Gaps = 1/396 (0%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| || Sbjct 826 AAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGTGCAAGCGTTAATCG 885 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| | |||||||||||| |||| || |||||| | || Sbjct 886 GAATTACTGGGCGTAAAGCGCGCGTAGGTGGTTCAGCAAGTTGGATGTGAAATCCCCGGG 945 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 ||||||| || ||||| | ||||| | | |||||||| | | || || ||||||| Sbjct 946 CTCAACCTGGGAACTGCATCCAAAACTACTGAGCTAGAGTACGGTAGAGGGTGGTGGAAT 1005 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | ||||||||||||||||||||||||| | |||||||||||||||||||||| | Sbjct 1006 TTCCTGTGTAGCGGTGAAATGCGTAGATATAGGAAGGAACACCAGTGGCGAAGGCGACCA 1065 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1066 CCTGGACTGATACTGACACTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 1125 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 |||||||||||||||||||||||| ||||| || ||| | | || || ||| Sbjct 1126 TGGTAGTCCACGCCGTAAACGATGTCGACTAGCCGTTGGGATCCTTGAGATCT-TAGTGG 1184 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| ||||| |||||| || ||||||||||| Sbjct 1185 CGCAGCTAACGCGATAAGTCGACCGCCTGGGGAGTA 1220 >seq6614 Length=2957 Score = 293 bits (324), Expect = 6e-77 Identities = 309/405 (76%), Gaps = 10/405 (2%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| |||||||||| |||||||||||||||||||||| |||| || ||| Sbjct 2147 TGAGGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGC 2088 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 ||| |||||||| | ||||||||||| || |||||||| | | ||||| | || ||| Sbjct 2087 GTTGTCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTCGTAAAGTCTAATGTCAAA 2028 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAA-ACTGCAGGGCTAGAGTGCAGGAGGGGC 183 | | ||||||||| || | || || || ||| | ||| |||| | || ||| Sbjct 2027 TACCAGGGCTCAACCTTGGACCGGCATTAGAGTACTCACGAGCTTGAGTATGGTAGAGGC 1968 Query 184 AAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGA 243 | |||||||| |||| |||||||||||||||||| ||| ||||||||||||||||||| Sbjct 1967 AGAGGGAATTCCAAGTGGAGCGGTGAAATGCGTAGAGATTTGGAGGAACACCAGTGGCGA 1908 Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 ||||| |||||| | ||||||||||||| ||||||| ||||||| || ||||| Sbjct 1907 AGGCGCTCTGCTGGGCCAAAACTGACACTGAGAGACGAAAGCTGGGGGAGCGAATAGGAT 1848 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTG 363 |||||||||| ||||||| ||||||||| ||| | |||| ||| | || ||| Sbjct 1847 TAGATACCCTAGTAGTCCCAGCCGTAAACTATGGAGACTAAGTGCTG----CCACAAG-- 1794 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | |||| | ||| ||||| ||||| | || ||||||||||| Sbjct 1793 ---CAGTGCTGTAGCTAACGCGTTAAGTCTCCCGCCTGGGGAGTA 1752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203078007552