Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq4701 365 2e-98 seq4842 183 1e-43 >seq4701 Length=5848 Score = 365 bits (404), Expect = 2e-98 Identities = 375/483 (78%), Gaps = 9/483 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || |||||| ||||||||||| ||||||||||||| | |||||| |||| Sbjct 2966 CGAGTCTTAATAGGGCGTTTAGTCGCTGGGTATAGACCCGAAACCGGGCGATCTATCCAT 3025 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 | |||| ||||||| |||||||| ||||||| ||||||||||| |||||||| Sbjct 3026 GAGCAGGTTGAAGGTTAGGTAACACTGACTGGAGGACCGAACCCACTCCCGTTGAAAAGG 3085 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 |||||||||| ||||| | || |||||||||||| ||| || ||| ||||||||||||| Sbjct 3086 TAGGGGATGACTTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTC 3145 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 ||||| |||||||||||| |||||| ||||||| | ||||||||||||||||| || Sbjct 3146 CTCGAAAGCTATTTAGGTAGCGCCTCATGTATCACTCTGGGGGGTAGAGCACTGTTTCGG 3205 Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-TTTAC 299 |||||||||||| |||||||||||||| |||||||||||||| | || ||| | Sbjct 3206 CTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCCAGAAGTGCCGAG 3265 Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | ||||| | ||| ||||||||| |||||| | ||| || || || ||| Sbjct 3266 CATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACC 3323 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||| ||| || | | ||||| | ||||| || || ||| ||||| Sbjct 3324 GCCAGCTAAGGTCCCAAAGTTGTGGTTAAGTGGTA--AACGATGTGGGAAGGCTTAGACA 3381 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 ||||||| |||||||| |||||||||| | |||||||| |||||| |||||||||||| Sbjct 3382 GCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTAGTC 3440 Query 478 GAG 480 ||| Sbjct 3441 GAG 3443 >seq4842 Length=5562 Score = 183 bits (202), Expect = 1e-43 Identities = 389/569 (68%), Gaps = 24/569 (4%) Strand=Plus/Plus Query 4 AGTCCGAACAGGGCG-ACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGG 62 |||| ||| |||||| | ||| || | | |||||||| || |||||||| ||||| Sbjct 1498 AGTCTGAATAGGGCGTATTGTCACTTCTTATGGACCCGAACCCGGGTGATCTATTCATGG 1557 Query 63 CCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTA 122 ||||||||||| | |||||||| |||||||||||||| || |||||||||||| Sbjct 1558 CCAGGATGAAGCTTGGGTAACACCAAGTGGAGGTCCGAACCGACCGATGTTGAAAAATCG 1617 Query 123 GGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTC 182 | |||||||||||| |||||| |||| | || | |||| ||| ||||||| |||| | Sbjct 1618 GCGGATGAGCTGTGAATAGGGGAGAAATTCCAATCGAACTCGGAGCTAGCTGGATCTCCC 1677 Query 183 CGAAAACTATTTAGGTAGTGCCTCAAGTAT-CACCATC-GGGGGTAGAGC-ACTGTTATG 239 ||||| || ||| || || || | ||| |||||| ||| |||||| | Sbjct 1678 CGAAATGCGTTGAGGCGCAGCGGTAACAATGGGCTATCTTGGGGTAAAGCGACTGTT-TC 1736 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC-GCATCAGTTTT- 297 | | ||| | | | |||||| | | |||||||| |||| | || | ||| Sbjct 1737 GATGCGGGCTGCGAGAGTGGTACCAAGTCGTGGCAAACTCAGAATACAAGATATGCTTTC 1796 Query 298 -----ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCC 352 ||| |||||| |||| | |||| | | | | ||||| || | || Sbjct 1797 TGTAAACC-----AGTGAGACGGTGGGGGATAAGCTTCATCGTCAAGAGGGAAACAGCCC 1851 Query 353 GGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTA 412 || | ||||||||||||| ||||| |||||| | || || || || |||| Sbjct 1852 AGATCACCAGCTAAGGCCCCTAAATGGTCACTAAGTGGTA--AAGGATGTGAGAATGCTG 1909 Query 413 AGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCAC 472 | ||| | |||| ||| |||| |||||||| | | || ||||||||||||| ||||||| Sbjct 1910 AAACAACCAGGAAGTTCGCTTAGAAGCAGCTA-CCTTTCAAAGAGTGCGTAATAGCTCAC 1968 Query 473 TAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGG 532 | || || || ||| |||||| |||| | ||||| || ||||||| ||| Sbjct 1969 TGGTAAAGCGTTCTTGCGCCGATAATGGCCGGG-ACTAAGTGACCTGCCGAAGCTGTGAT 2027 Query 533 ATCATTTAT---ATGATCGGTAGGGGAGC 558 ||| ||||| | | | ||||||||||| Sbjct 2028 ATCCTTTATAAAAGGGTAGGTAGGGGAGC 2056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689428691456