Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq6710 131 5e-28 seq508 87.8 6e-15 >seq6710 Length=2816 Score = 131 bits (144), Expect = 5e-28 Identities = 94/108 (87%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 || || ||||||||| |||| ||| ||||||||||||||| ||||||| |||||| Sbjct 1523 ATGGAATAAGTAAAACAACGTTAAAAGTAGTGGTATTTCACCGTCGCCGAA---GCTCCC 1467 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA 289 ||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 1466 ACTTATTCTACACCTCTTAAGTTATTTCACAAAGTCGGACTAGAGTCA 1419 >seq508 Length=46693 Score = 87.8 bits (96), Expect = 6e-15 Identities = 72/87 (83%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 || || ||||||||| |||| ||| ||||||||||||||| ||||||| |||||| Sbjct 24084 ATGGAATAAGTAAAACAACGTTAAAAGTAGTGGTATTTCACCGTCGCCGAA---GCTCCC 24028 Query 242 ACTTATTCTACACCTCTCAAGTCATTT 268 ||||||||||||||||| || | |||| Sbjct 24027 ACTTATTCTACACCTCTGAACTTATTT 24001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635034207072