Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq4701 288 3e-75 seq4842 138 4e-30 seq4494 98.7 3e-18 >seq4701 Length=5848 Score = 288 bits (318), Expect = 3e-75 Identities = 338/455 (74%), Gaps = 13/455 (3%) Strand=Plus/Minus Query 111 ACCGCCCCAGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTT 170 ||||||||||| ||||| ||||||| |||||||| | | || ||||| || ||| ||| Sbjct 4585 ACCGCCCCAGTCAAACTGCCCACCATACACTGTCCTCGATCCGGATCACGGACCAGAGTT 4526 Query 171 AGATATCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCC 230 ||| || | ||| |||||||||||| | | |||||| ||| |||| | Sbjct 4525 AGAACCTCAAGCATGCCAGGGTGGTATTTCAAGGATGGCTCCACGCGAACTGGCGTCCAC 4466 Query 231 GCATCATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAG 290 || ||| || |||||||||||||||||||| | | | || ||| | | |||||| || Sbjct 4465 GCTTCAAAGCCTCCCACCTATCCTACACAAGCAGGCTCAAAGTCCAGTGCAAAGCTACAG 4406 Query 291 TGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGA-GCATCTTTACTCGTACTG 348 | ||||| | |||||||||| |||| |||||| || || ||||||| || | | Sbjct 4405 TAAAGGTTCACGGGGTCTTTCCGTCTAGCCGCG-GATACACTGCATCTTCACAGCGATTT 4347 Query 349 CAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTC 408 ||||||||| | | || ||| |||||||| | ||||||||||||||||||||||| Sbjct 4346 CAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTC 4287 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 4286 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTT 4227 Query 469 ACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACC 528 || |||||||| || | || || | || ||| || | |||||| Sbjct 4226 ACCGGGGCTTCGATCAAGAGCTTCGC----------TTGCGCTAACCCCATCAATTAACC 4177 Query 529 TTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 |||| ||||||||||||||||| || ||||| || Sbjct 4176 TTCCGGCACCGGGCAGGCGTCACACCCTATACGTC 4142 Score = 84.2 bits (92), Expect = 7e-14 Identities = 94/122 (77%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| ||| ||||||||||||||| | ||| ||| ||| |||| || ||| |||| | Sbjct 5204 TCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACC-GATTTC 5146 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| | ||||| | ||||| | | |||||||||| ||| ||| || ||||||||| Sbjct 5145 CGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGA-GGAGACCGCCCCA 5087 Query 120 GT 121 || Sbjct 5086 GT 5085 >seq4842 Length=5562 Score = 138 bits (152), Expect = 4e-30 Identities = 302/441 (68%), Gaps = 10/441 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||||||||| ||| ||||||||| |||||| || Sbjct 4406 TCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTACACTCAATGTCTGATTTCC 4347 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||||||||||| | |||| ||||| |||| || ||| ||||||| Sbjct 4346 GTCCAGACTGAGGGAACCTTTGCACACCTCAGTTACCTTTTATGA-GGCGTTCGCCCCAA 4288 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGA-TCATGGGCCAAGGTTAGATATCCA 179 ||||| |||||| | |||||| || || ||| || | |||| || | Sbjct 4287 ACAAACTGCCCACCTGAAACTGTCAAGGGTCCTGATTCAAGGATCCCCATTAGGATTCTA 4228 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 | ||||||||| | ||| | | ||| | | | | | | |||| | Sbjct 4227 GCTCTTCCAGAGTGGTCTCTCACTGATGGCTCTAATTACCCCGGAAGGTAATCTTCATCG 4168 Query 240 TCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAAG-G 296 |||||||||| || | || || || ||||| ||||| ||||| || ||| ||| Sbjct 4167 CCTCCCACCTAGGCTGCGCAAGAAAAGC-CCGAA-CCCAATTCCAAGATACAGTCAAGCT 4110 Query 297 TCCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCG-TACTGCAATTTC 355 || |||||||| |||| | | | | ||||||| || | | | ||||| Sbjct 4109 TCATAGGGTCTTTCTGTCCAGGTGTAGGTAGTCCGCATCTTCACGGGACAAGTCTATTTC 4050 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACT 414 |||| | || | |||||||| | || |||||||||| ||||||||||||| |||| Sbjct 4049 ACCGAGTCTCTCTCCGAGACAGC-GCCCAGATCGTTACGCCTTTCGTGCAGGTCGAAACT 3991 Query 415 TACCCGACAAGGAATTTCGCT 435 ||| |||||| |||||||||| Sbjct 3990 TACTCGACAATGAATTTCGCT 3970 >seq4494 Length=6333 Score = 98.7 bits (108), Expect = 3e-18 Identities = 95/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 349 CAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCA-GGT 407 ||| ||||| | || || ||||||||| | ||||||| ||||||| |||| || Sbjct 3202 CAAATTCACAGATCCCATGACTGAGACAGCCCGACAGTCGTTCAGCCATTCATGCAAGGA 3261 Query 408 CGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTT 467 || | ||| || ||||||||||||||||||||||| ||||| ||||||| |||||||| Sbjct 3262 CGCCAATTAAACGTCAAGGAATTTCGCTACCTTAGGACGGTTAGAGTTACCGCCGCCGTT 3321 Query 468 T 468 | Sbjct 3322 T 3322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702227393664