Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq4701 176 1e-41 seq6614 163 6e-38 >seq4701 Length=5848 Score = 176 bits (194), Expect = 1e-41 Identities = 215/293 (73%), Gaps = 23/293 (8%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| ||||||||| |||| ||| ||| Sbjct 854 GGCTGCTGGCACGAAGTTAGCCGGTGCTTATTCTGTTGGTAACGTCAAA-----ACA--- 803 Query 61 GGAAGGTTTTA------TTCCCTTA--------TAAAAGAAGTTTACAATCCGTAGAACC 106 | ||||| ||| | ||||| | |||| ||||||||||| ||| || Sbjct 802 GCAAGGTATTAACTTACTGCCCTTCCTCCCAACTTAAAGTGCTTTACAATCCGAAGA-CC 744 Query 107 TTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACT 166 ||| || ||||| | ||||||| |||| || ||| |||||| |||||||||| |||| Sbjct 743 TTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACT 684 Query 167 GCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCA 226 |||||||||||||||||| |||||||||||||||||||| |||| || | |||||||| Sbjct 683 GCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCA 624 Query 227 GAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || | || ||||| | || ||| |||| ||||||| || |||| ||||| Sbjct 623 GACCAGTTACGGATCGTCGCCTTGGTAGGCCTTTACCCCACCAACTAGCTAAT 571 >seq6614 Length=2957 Score = 163 bits (180), Expect = 6e-38 Identities = 214/296 (72%), Gaps = 19/296 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||| ||||||||| | || ||| ||| Sbjct 2111 GGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCCTCAGATAC---------------CGT 2155 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | || ||| || | ||||| ||||||||| || | || || |||| ||||| Sbjct 2156 C--AGATCTTCTTCTCTGAGAAAAGCAGTTTACAACCCACGGG-CCGTCTTCCTGCACGC 2212 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || |||||||||||||||||||||||| Sbjct 2213 GGCATTGCTTCGTCAGGCTTTCGCCCATTGCGAAAAATTCCTCACTGCTGCCTCCCGTAG 2272 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 2273 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 2332 Query 241 CGTAGGCTAGGTGGGCCGTTA-CCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 ||| | || || |||||||| |||| || |||| ||||| ||||| ||| || Sbjct 2333 CGTGGCCTTGGGAGGCCGTTACCCCCTCCAACTAGCTAATCAGACGCAAGCCCCTC 2388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068691634368