Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq5054 545 3e-150 seq4579 221 1e-52 >seq5054 Length=5139 Score = 545 bits (604), Expect = 3e-150 Identities = 545/702 (78%), Gaps = 6/702 (1%) Strand=Plus/Plus Query 159812 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTGATGATCCCA 159871 ||| | ||||| || | ||||| | || ||||||||||||| || | ||||| ||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 159872 ACTCTGTTGGCAGCAACTATCTG-CTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGA 159930 ||| | | ||||| ||| | |||||| |||| |||||||||||||| || || || Sbjct 905 TGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 159931 CATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAACATCATCTC 159990 ||||||||| ||||||||||| || | ||||| || | |||||||||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 159991 TGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATTTGGGAAGC 160050 ||||| ||||| || |||| ||||| || |||||||||||||| || ||||||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 160051 CGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTCTTCCACTT 160110 || || | ||||| ||| | |||||||||||||||| |||||| | || | |||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 160111 CCTGATCGGCATCTATGC--CTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGT 160168 ||| | || | ||||| ||| ||||||||||| |||||| | || | |||| | ||| Sbjct 1144 CCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGT 1201 Query 160169 ATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTC 160228 |||||||| |||||| |||||| ||||| |||||||| ||||||||||| ||||||||| Sbjct 1202 ATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTC 1261 Query 160229 CTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGT 160288 | || ||||| |||| || ||||| ||||| || | |||||| | ||||| || ||| Sbjct 1262 TTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGT 1321 Query 160289 ACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCAC 160348 || ||||||| ||| | ||||||||||| || ||||| ||||||||||| ||||||||| Sbjct 1322 ACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCAC 1381 Query 160349 ATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTG 160408 ||| | ||||||||||| ||||| ||||| || | |||||||||||||| || || | Sbjct 1382 ATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTA 1441 Query 160409 GTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAG 160468 |||||||| | | || | || || || |||| || || ||| |||||| Sbjct 1442 GTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGT 1501 Query 160469 TTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACAT 160510 ||||||||||| ||||||||||||||||| || || || ||| Sbjct 1502 TTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 160511 GGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCAC 160570 || ||||| |||||| | ||||||||||| || || || |||||||| || || | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 160571 TTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACC 160630 |||||| | ||||||||||| || | || || ||||||||||| | ||| | || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 160631 ATGGCATTCAATCTCAATGGTTTC 160654 ||||||||||| | || |||||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 160653 TCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACG 160712 ||||||||||||| || | | ||| ||||| | || | ||||||||||| ||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 160713 TGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCC 160772 | | ||||| ||| | || |||||||| |||||||||||||||||||||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 160773 CTCTCGACCTTGCTGCTGCTGAGTCAACT 160801 | | ||| | ||| || || | ||| || Sbjct 5070 CGTTAGACTTAGCTTCTTCTAACTCAGCT 5098 >seq4579 Length=6132 Score = 221 bits (244), Expect = 1e-52 Identities = 354/508 (70%), Gaps = 8/508 (2%) Strand=Plus/Minus Query 161512 TGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCT 161571 ||||| |||| ||| ||||||||| | ||| |||||||| || || || ||||| Sbjct 4114 TGGTTTGATGATGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 4055 Query 161572 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACT 161631 || | | ||||| || ||||||| |||| | || || ||| ||||||| || ||| Sbjct 4054 GGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAACT 3995 Query 161632 TTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAATTTT 161691 || | ||| |||||||| ||||| | |||| ||| || | || ||| || || Sbjct 3994 TTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 3935 Query 161692 CTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGG 161751 | || || || ||| || ||| || || | | | ||| |||||||| || | ||| Sbjct 3934 TTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTGG 3875 Query 161752 GGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTT 161811 |||||||| |||||||| |||||| | ||| || ||||| || | ||| ||| Sbjct 3874 GGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATTT 3815 Query 161812 GTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCT 161871 | || | ||||| || || | | | ||||| ||||||||||||||||||||| ||||| Sbjct 3814 ATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 3755 Query 161872 CGTCTTATCGGTA----TCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGT 161927 ||| || ||| | ||||| || || |||||||||||||| | ||| |||||||| Sbjct 3754 CGT----TCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGT 3699 Query 161928 TTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATC 161987 ||| || || || || ||||| | || || || |||||||| || ||| Sbjct 3698 TTTCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAG 3639 Query 161988 GTTTGGGGTTGCCGCTATTTTCAGGTTC 162015 ||||| ||||| || || ||| | ||| Sbjct 3638 CTTTGGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 203 bits (224), Expect = 4e-47 Identities = 236/317 (74%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 162214 ACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTG 162273 ||||| ||||||||||||||||| ||||| ||| | ||||| || || |||||| | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 162274 CATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATT 162333 || ||||| ||| | || ||||| || | ||||| |||| | |||| |||||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 162334 GGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAG 162393 || | || | || | |||||||| ||||| || ||||| ||||||||||| || || Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 162394 GATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCA 162453 || |||||||||||||| |||||||| || || | | || ||||||||| ||||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 162454 TGGTTGGCACCAGTT---GATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTG 162510 ||| ||| | ||| || ||||| ||||| ||||| |||||||| ||||| | Sbjct 486 TGGATGG---CTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTA 430 Query 162511 CCTAGAGGTAACGCACT 162527 ||| | |||||||| || Sbjct 429 CCTCGTGGTAACGCTCT 413 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 162028 CAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTG 162087 |||||||| || || ||||| | || || ||||||||||||||||| || ||| | || Sbjct 2130 CAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTA 2071 Query 162088 GGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGAT 162147 |||| |||||| | | |||||||||||||| ||||| |||||||| | | ||||| Sbjct 2070 GGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAGAT 2011 Query 162148 GGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCG 162207 ||||| || || |||||| || || || |||| || | || || || || || Sbjct 2010 GGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAACATATTCT 1951 Query 162208 ATGGT 162212 ||||| Sbjct 1950 ATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551306119984200