Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq5054 480 1e-130 seq4579 262 5e-65 >seq5054 Length=5139 Score = 480 bits (532), Expect = 1e-130 Identities = 528/700 (75%), Gaps = 2/700 (0%) Strand=Plus/Plus Query 188860 TGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCT 188919 ||| | || || ||| | |||||| | || |||||||||||||||| | ||||| || Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 188920 ACGCTTCTCGCTGCAACCATCTG-CTTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGA 188978 ||||| |||||| |||| | |||||| |||| || ||||||| || || ||||| Sbjct 905 TGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 188979 CATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTC 189038 ||| ||||| ||||| ||||| || | ||||| || | || || |||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 189039 TGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGC 189098 ||||||||||| || | || ||||| || ||||||||||||||||| || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 189099 CGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTT 189158 || || | || || ||| | || ||||||||||||| |||||| | || | |||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 189159 CCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTAT 189218 ||| | || | | | ||||||||||||||| |||||| | || | |||| | ||||| Sbjct 1144 CCTTTTAGGTGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTAT 1203 Query 189219 GCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCT 189278 |||||| |||||| |||||||||| || || || || || || || || || || | Sbjct 1204 GCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCTT 1263 Query 189279 GGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAAC 189338 || || || | || |||||||| ||||| |||| ||||| || ||||| || || Sbjct 1264 AGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTAC 1323 Query 189339 CTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACAT 189398 || |||| |||| | || |||||||| |||||||||||||| |||||||| |||||||| Sbjct 1324 ATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACAT 1383 Query 189399 GCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGT 189458 | | || || || ||||| || ||||||||| | ||||| || ||||| |||||| | || Sbjct 1384 GTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGT 1443 Query 189459 TACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTT 189518 ||| || || | | |||||||| ||||||| ||| || ||| |||||| || Sbjct 1444 TACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGTTT 1503 Query 189519 TGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCAT 189558 || ||||||||||| || |||||||| || ||||||||| Sbjct 1504 CGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 189559 GGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCAC 189618 || || || |||||||| ||||||||||| || || ||||||||||| |||||| | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 189619 TTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACC 189678 |||||| | ||||| ||||| || | ||||| ||||| || || | || | || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 189679 ATGGCATTCAACCTCAATGGGTTC 189702 |||||||||||| | || || ||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 189701 TCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACG 189760 |||||||||| ||||| | | || ||||||||||| | ||||| ||||| ||| Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 189761 TTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCC 189820 | ||||||||||| | ||||||||||| ||||| |||||||||||||||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 189821 C 189821 | Sbjct 5070 C 5070 >seq4579 Length=6132 Score = 262 bits (290), Expect = 5e-65 Identities = 366/510 (72%), Gaps = 10/510 (2%) Strand=Plus/Minus Query 189983 ATGGTTTGAC-ATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGT 190041 ||||||||| || || |||||||||||| | ||| || || || || || ||||||| Sbjct 4115 ATGGTTTGATGATGCT-GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGT 4057 Query 190042 CTGGATTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGA 190101 | || ||| | ||||| || ||||||| | ||| | ||||||||| ||||||| || | Sbjct 4056 CAGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAA 3997 Query 190102 CGTTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATT 190161 | |||| |||| ||||| || || || | || | | |||| | || ||| ||| | Sbjct 3996 CTTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACT 3937 Query 190162 TTCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTT 190221 | | || || || || ||||| || || | | | | ||| |||||||| | ||| Sbjct 3936 TCTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTT 3877 Query 190222 GGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTT 190281 ||||||||||| ||||||| |||||| | ||| || ||||| || | ||||| | Sbjct 3876 GGGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCAT 3817 Query 190282 TTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGG 190341 || | || | ||||| || || | | ||||||| ||||||||||||||||||||| | | Sbjct 3816 TTATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTG 3757 Query 190342 CACGTCTCATCGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCT 190397 | ||| || ||| | ||||| || || |||||||| ||||| | ||| || ||| Sbjct 3756 CTCGT----TCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCT 3701 Query 190398 GTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCA 190457 ||||| | || || || || || || | |||||||| |||||||||| || ||| Sbjct 3700 GTTTTCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCA 3641 Query 190458 TCCTTCGGTGTGGCAGCGATCTTCCGCTTC 190487 ||| ||||| ||||| |||||||| ||| Sbjct 3640 AGCTTTGGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 212 bits (234), Expect = 8e-50 Identities = 238/317 (75%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 190686 ACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTG 190745 ||||| |||||||||||||| |||||||||||||| || ||| || || | ||| | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 190746 CATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATT 190805 || ||||| ||| | || |||||||||| ||||| |||| ||| | || |||||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 190806 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAA 190865 ||| | || | ||| | |||||||||||||| || || |||||||| | || || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 190866 GATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCA 190925 || || || || || ||||| ||||| ||||| | | || ||||||||| ||||| | Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 190926 TGGTTGGCACCTGTT---GATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTG 190982 ||| |||| |||| || ||||| ||||| |||||| || || ||||||||||| Sbjct 486 TGGATGGC---TGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTA 430 Query 190983 CCAAGAGGCAACGCTCT 190999 || | || |||||||| Sbjct 429 CCTCGTGGTAACGCTCT 413 Score = 116 bits (128), Expect = 5e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 190491 CTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCA 190550 || || || || || || ||||||||||| | ||||| |||||||||||||||||||| Sbjct 2139 CTGTTTTTCCAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCT 2080 Query 190551 GGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATACTTTG 190610 ||| | | || | || || | | || || || |||| |||||||| || || || Sbjct 2079 GGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTA 2020 Query 190611 TATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAG 190670 | |||||||||||| || ||||| || |||||| || ||||||| | ||||| Sbjct 2019 TTTGAAGATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAA 1960 Query 190671 ACCTATTCGATGGT 190684 || ||||| ||||| Sbjct 1959 ACATATTCTATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633999638286000