Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq5054 526 2e-144 seq4579 271 9e-68 >seq5054 Length=5139 Score = 526 bits (582), Expect = 2e-144 Identities = 538/700 (77%), Gaps = 2/700 (0%) Strand=Plus/Plus Query 160581 TGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCA 160640 ||| | ||||| || | || ||| | ||| |||||||||||||||| | ||||| ||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 160641 ACTCTGTTGGCAGCAACCGTCTGCTTT-ATTACTGCGTTCGTTGCTGCTCCCCCCGTGGA 160699 ||| | | ||||| || | || || | || ||| | |||||||| || || || Sbjct 905 TGTCTTCTTACTGCAACA-TCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 160700 CATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTC 160759 |||||| |||||||||||||| ||| | ||||| || | || || |||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 160760 TGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGC 160819 ||||| ||||| || |||| ||||| || ||||||||||||||||| ||||||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 160820 TGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTT 160879 ||| ||| | || |||||| | || || ||||||||||||||||| |||| | ||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 160880 CCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCAT 160939 ||| | || | | ||||||||||||||| || |||||| | || | ||| | || || Sbjct 1144 CCTTTTAGGTGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTAT 1203 Query 160940 GCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCT 160999 ||| || |||||| ||||| || || || || || |||||||| || |||||| | Sbjct 1204 GCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCTT 1263 Query 161000 CGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTAC 161059 || || || |||| |||||||| ||||| || |||||||| | ||||| || ||||| Sbjct 1264 AGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTAC 1323 Query 161060 CTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACAT 161119 || ||||||||| | || ||||| || || ||||||||||| |||||||| |||||||| Sbjct 1324 ATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACAT 1383 Query 161120 GTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGT 161179 ||| |||||||||||||| || |||||||| | ||||| || ||||| |||||| | || Sbjct 1384 GTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGT 1443 Query 161180 TACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTT 161239 |||||| || | | |||||||| ||||| ||||| || ||| |||||| || Sbjct 1444 TACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGTTT 1503 Query 161240 TGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCAT 161279 ||||||||||||||||| |||||||| || ||||||||| Sbjct 1504 CGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 147 bits (162), Expect = 2e-30 Identities = 119/144 (83%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 161280 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCAC 161339 |||||||| ||||| || ||||||||||||||||| ||||||||||| ||||| || ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 161340 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACC 161399 |||||| | || || ||||| || ||||||| ||||||||||| | ||| | || || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 161400 ATGGCATTCAACCTGAACGGATTC 161423 |||||||||||| | ||||| ||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 161466 AACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGT 161525 ||||| ||||| ||| | | || ||||||||| | |||||||||||||||||||||||| Sbjct 4994 AACACTTGGGCGGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGT 5053 Query 161526 AATGCTCACAACTTCCC 161542 || |||||||||||||| Sbjct 5054 AACGCTCACAACTTCCC 5070 >seq4579 Length=6132 Score = 271 bits (300), Expect = 9e-68 Identities = 367/506 (73%), Gaps = 4/506 (1%) Strand=Plus/Minus Query 163884 TGGTTCGATG-TCCTGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTC 163942 ||||| |||| | ||| | ||||||||| | ||| || || || || || |||||||| Sbjct 4114 TGGTTTGATGATGCTG-ATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 163943 TGGATTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAAC 164002 || ||| | ||||| || ||||||| ||||| | ||||||||| ||||||||||||| Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 164003 GTTTGTTACCAGTTGGTACACCCACGGTCTCGCGTCTAGTTACCTTGAGGGTGCTAATTT 164062 |||||||| ||||| || || ||| | || || |||| | || ||| ||| || Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 164063 CCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 164122 | | || || || || ||||| || || | | | | ||| |||||||| | |||| Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 164123 GGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTT 164182 ||||||||| |||| || || |||| | ||||| || ||||| || | ||||| || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 164183 TGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGC 164242 | | || || ||||| | || | | | || |||||||||||||| |||||||||||||| Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 164243 ACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTT 164302 ||| ||| | ||||| || || |||||||| ||||| | ||| |||||||| || Sbjct 3755 TCGTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGT-TT 3697 Query 164303 TGTCAGC-GTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGT 164361 | | | |||||||| || || || | || ||||| ||||||||||||| || | Sbjct 3696 TCACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCT 3637 Query 164362 TTGGGGTCGCGGCGATCTTCAGATTC 164387 |||| || || || |||||| | ||| Sbjct 3636 TTGGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 197 bits (218), Expect = 2e-45 Identities = 240/327 (73%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 164586 ACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTG 164645 ||||| ||||| |||||||| || || |||||| | |||||| || || |||||| | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 164646 CACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATC 164705 |||||||| ||| | || |||||||| | || || |||| | |||||||||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 164706 GGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAG 164765 ||| | ||| | || | ||||||||||| || || ||||| |||||| | || || || Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 164766 GATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCC 164825 || ||||||||||| || ||||| ||||| ||| | | | |||||||| | ||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 164826 TGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCG 164885 ||||||||| |||||| ||||| ||| ||||| || || || ||||| | || Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 164886 AGAGGTAACGCACTCTAAACTTTTAAT 164912 | |||||||| || ||| |||||| Sbjct 426 CGTGGTAACGCTCTATAATTATTTAAT 400 Score = 145 bits (160), Expect = 9e-30 Identities = 148/193 (77%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 164392 TGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAG 164451 |||| |||||||||| ||||||||||| | ||||| ||||| |||||||||||||| | Sbjct 2138 TGTTTTTCCAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTG 2079 Query 164452 GCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGT 164511 | | | |||| |||| | | ||||||||||| |||||||| ||||| || || || | Sbjct 2078 GTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTAT 2019 Query 164512 TTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGA 164571 ||||||||||||| | || |||||| |||||| | ||||| || | ||||| | Sbjct 2018 TTGAAGATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAA 1959 Query 164572 CTTACTCGATGGT 164584 | || || ||||| Sbjct 1958 CATATTCTATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559257112167600