Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1163 295 1e-77 seq1536 293 4e-77 seq1540 147 3e-33 >seq1163 Length=8794 Score = 295 bits (326), Expect = 1e-77 Identities = 222/256 (87%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| | Sbjct 7519 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 7576 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||| || ||||||||| ||||||||||||||||| | ||| ||||||| Sbjct 7577 CTCGTTGAAGACTAATAATTGCAATAATCTATCCCCATCACGACGCGGTTTACAAGATTA 7636 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||| |||||||||| |||| ||||||| | |||||||||||||||||||| Sbjct 7637 CCCGGGCCTCTCGGCCAAGG--ATAGGCTCGTTGGTCGCGTCAGTGTAGCGCGCGTGCGG 7694 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||| |||||| |||||| | | ||||| | Sbjct 7695 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCATACTTCCATTGGCTAAACG 7754 Query 241 GCCAT-CTCCCTCGAA 255 | || |||||| || Sbjct 7755 CCAATAGTCCCTCTAA 7770 >seq1536 Length=1886782 Score = 293 bits (324), Expect = 4e-77 Identities = 210/238 (88%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| | Sbjct 1696773 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 1696830 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||| || ||||||||| ||||||||||||||||| | ||| ||||||| Sbjct 1696831 CTCGTTGAAGACTAATAATTGCAATAATCTATCCCCATCACGACGCGGTTTACAAGATTA 1696890 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||| |||||||||| |||| ||||||| | |||||||||||||||||||| Sbjct 1696891 CCCGGGCCTCTCGGCCAAGG--ATAGGCTCGTTGGTCGCGTCAGTGTAGCGCGCGTGCGG 1696948 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||||||||||||||||||| |||||| |||||| | | ||||| Sbjct 1696949 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCATACTTCCATTGGCTAAA 1697006 >seq1540 Length=2046089 Score = 147 bits (162), Expect = 3e-33 Identities = 96/103 (93%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| | Sbjct 31759 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 31816 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 |||||||||||| || ||||||||| ||||||||||||||||| Sbjct 31817 CTCGTTGAAGACTAATAATTGCAATAATCTATCCCCATCACGA 31859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751988649970