Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1118 259 2e-66 seq149 259 2e-66 seq55 196 2e-47 seq646 123 1e-25 >seq1118 Length=8580 Score = 259 bits (286), Expect = 2e-66 Identities = 233/290 (80%), Gaps = 16/290 (6%) Strand=Plus/Plus Query 402 AAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT 461 || || ||||||||| |||||||||||||||||||||||| ||||||||| ||||| Sbjct 7939 AATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTTGGCGGGTGG 7998 Query 462 CAAACCCGTGCGCGTAATGAAAGTGAACGGAGG--TGGG----AACCCGTGAGGGTGCAC 515 |||||||| ||| || || ||| || || |||| ||||| ||||| Sbjct 7999 AAAACCCGTAAGCGCAAGTAACCTGACTGGTGGGATGGGGTAAAACCC-------TGCAC 8051 Query 516 CATCGACCGATCCTGATGT--CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACC 573 |||||||||| | || ||| || || | || ||||||| ||||||| ||||||||||| Sbjct 8052 CATCGACCGACCATGTTGTTTCTACGAAAGG-TTTGAGTGCGAGCATACCTGTTGGGACC 8110 Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 8111 CGAAAGATGGTGAACTATGCCTGAGCAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 8170 Query 634 GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | || || ||| ||||||||||| | ||| | |||||||||||||||| Sbjct 8171 GTAGATGTGCTGACGTGCAAATCGCTTTTCAGACTTGGGTATAGGGGCGA 8220 >seq149 Length=1223 Score = 259 bits (286), Expect = 2e-66 Identities = 233/290 (80%), Gaps = 16/290 (6%) Strand=Plus/Plus Query 402 AAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT 461 || || ||||||||| |||||||||||||||||||||||| ||||||||| ||||| Sbjct 199 AATCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTTGGCGGGTGG 258 Query 462 CAAACCCGTGCGCGTAATGAAAGTGAACGGAGG--TGGG----AACCCGTGAGGGTGCAC 515 |||||||| ||| || || ||| || || |||| ||||| ||||| Sbjct 259 AAAACCCGTAAGCGCAAGTAACCTGACTGGTGGGATGGGGTAAAACCC-------TGCAC 311 Query 516 CATCGACCGATCCTGATGT--CTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACC 573 |||||||||| | || ||| || || | || ||||||| ||||||| ||||||||||| Sbjct 312 CATCGACCGACCATGTTGTTTCTACGAAAGG-TTTGAGTGCGAGCATACCTGTTGGGACC 370 Query 574 CGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 633 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 371 CGAAAGATGGTGAACTATGCCTGAGCAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTC 430 Query 634 GCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | || || ||| ||||||||||| | ||| | |||||||||||||||| Sbjct 431 GTAGATGTGCTGACGTGCAAATCGCTTTTCAGACTTGGGTATAGGGGCGA 480 >seq55 Length=1051 Score = 196 bits (216), Expect = 2e-47 Identities = 151/178 (85%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 |||| | ||| |||||||| |||||||||||||||||| |||| | |||||||||| | Sbjct 835 GAAGTGCTTTCCACGAGTCGGGTTGTTTGGGAATGCAGCCCTAATTTGGAGGTAAATCCC 894 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 |||||| |||||||| || | |||||||||||||| ||||||| |||| ||||||||| Sbjct 895 TTCTAAGGCTAAATACTGCCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGA 954 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 |||| |||||| |||||||||| ||||| | |||||||||||| ||||||||| ||| Sbjct 955 AAAGAACTTTGAAAAGAGAGTT-AAAAGTGCTTGAAATTGTTGAGAGGGAAGCGATTG 1011 >seq646 Length=3696 Score = 123 bits (136), Expect = 1e-25 Identities = 99/117 (85%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 88 CTAAAGCTAAATATTGGCC-AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 |||| |||||||| || | |||||||||||||| ||||||| |||| |||||||||| Sbjct 2582 CTAAGGCTAAATACTGCCNGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAA 2641 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 ||| |||||| |||||||||| ||||| | |||||||||||| ||||||||| ||| Sbjct 2642 AAGAACTTTGAAAAGAGAGTT-AAAAGTGCTTGAAATTGTTGAGAGGGAAGCGATTG 2697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079966580900