Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq1558 82.4 7e-14 >seq1558 Length=203828 Score = 82.4 bits (90), Expect = 7e-14 Identities = 132/180 (73%), Gaps = 10/180 (6%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGT-GATAAGCTGCGAAAAGCTAC 64 |||||||| ||||||| ||| ||| ||||||||| || |||| | |||| | ||| | Sbjct 41841 ACGGTGGAGACCTAGGCACTCAGAGACGAAGAAGGGCGCAGATAC-CGGCGATACGCTTC 41899 Query 65 GGGGAT-TGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATAT-T 122 ||||| ||||| | | | |||||||| |||| |||||| |||||||| ||| | | Sbjct 41900 GGGGAGCTGGCA-ACAAGCTTTGATCCGAAGATTCCCGAATAGGGCAACCTCATAGAACT 41958 Query 123 GGAGATATA--TCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||||| ||||| | |||| |||| ||| | ||||||||||||||||||| Sbjct 41959 ACCTATATAATTCATA--GTTAGGTAAGAGGC-AACCCAGTGAACTGAAACATCTAAGTA 42015 Score = 82.4 bits (90), Expect = 7e-14 Identities = 132/180 (73%), Gaps = 10/180 (6%) Strand=Plus/Minus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGT-GATAAGCTGCGAAAAGCTAC 64 |||||||| ||||||| ||| ||| ||||||||| || |||| | |||| | ||| | Sbjct 152362 ACGGTGGAGACCTAGGCACTCAGAGACGAAGAAGGGCGCAGATAC-CGGCGATACGCTTC 152304 Query 65 GGGGAT-TGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATAT-T 122 ||||| ||||| | | | |||||||| |||| |||||| |||||||| ||| | | Sbjct 152303 GGGGAGCTGGCA-ACAAGCTTTGATCCGAAGATTCCCGAATAGGGCAACCTCATAGAACT 152245 Query 123 GGAGATATA--TCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||||| ||||| | |||| |||| ||| | ||||||||||||||||||| Sbjct 152244 ACCTATATAATTCATA--GTTAGGTAAGAGGC-AACCCAGTGAACTGAAACATCTAAGTA 152188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476792803598