Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1558 250 6e-64 >seq1558 Length=203828 Score = 250 bits (276), Expect = 6e-64 Identities = 260/337 (77%), Gaps = 3/337 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 38986 TATCTGAGGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGC 39045 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||||||| || ||| | |||||||||||||| | ||| || | ||| | ||| Sbjct 39046 AAGCGTTGTCCGCAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTCGTAAAGTCTAATGT 39105 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTG-ACTGCACGA-CTAGAGTGTGTCA 180 |||| || ||||| ||||| ||| ||||| | | ||| ||||| || |||| | | Sbjct 39106 CAAATACCAGGGCTCAACCTTGGACCGGCATTGGAGTACT-CACGAGCTTGAGTACGGTA 39164 Query 181 GAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240 | || | ||||||||| ||| ||| |||||||||||||| || ||||||||||||| | Sbjct 39165 GGGGCAGAGGGAATTCCATGTGGAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGT 39224 Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300 ||||||||| | ||||| | |||||| || | |||||||| ||||||| || Sbjct 39225 GGCGAAGGCGCTCTGCTGGGCCGAAACTGACACTGAGAGACGAAAGCTGGGGGAGCGAAT 39284 Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||| ||||||| ||| ||||| || Sbjct 39285 AGGATTAGATACCCTAGTAGTCCCAGCCGTAAACTAT 39321 Score = 250 bits (276), Expect = 6e-64 Identities = 260/337 (77%), Gaps = 3/337 (1%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 155217 TATCTGAGGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGC 155158 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||||||| || ||| | |||||||||||||| | ||| || | ||| | ||| Sbjct 155157 AAGCGTTGTCCGCAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTCGTAAAGTCTAATGT 155098 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTG-ACTGCACGA-CTAGAGTGTGTCA 180 |||| || ||||| ||||| ||| ||||| | | ||| ||||| || |||| | | Sbjct 155097 CAAATACCAGGGCTCAACCTTGGACCGGCATTGGAGTACT-CACGAGCTTGAGTACGGTA 155039 Query 181 GAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240 | || | ||||||||| ||| ||| |||||||||||||| || ||||||||||||| | Sbjct 155038 GGGGCAGAGGGAATTCCATGTGGAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGT 154979 Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300 ||||||||| | ||||| | |||||| || | |||||||| ||||||| || Sbjct 154978 GGCGAAGGCGCTCTGCTGGGCCGAAACTGACACTGAGAGACGAAAGCTGGGGGAGCGAAT 154919 Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||| ||||||| ||| ||||| || Sbjct 154918 AGGATTAGATACCCTAGTAGTCCCAGCCGTAAACTAT 154882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289579908032