Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1558 143 4e-32 >seq1558 Length=203828 Score = 143 bits (158), Expect = 4e-32 Identities = 181/248 (73%), Gaps = 17/248 (7%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || ||| || | ||||| | ||| || Sbjct 43687 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTAC-GACTTTGCGG 43629 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| | || || |||||||| Sbjct 43628 AGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACC------------ 43581 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| | ||| || | | || |||||||| ||||||||||||||||| |||||||| Sbjct 43580 -CACCTTGTT-AC--GGATGGGTGCCCCTTCTTCCGAAGTTACGGGGCCAGTTTGCCGAG 43525 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | ||||| | || | |||| |||||||||||| | |||||||||||| Sbjct 43524 TTCCTTAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTCTACCAACCTACCTGTGTCGGT 43465 Query 241 TTACGGTA 248 || |||| Sbjct 43464 TTCAGGTA 43457 Score = 143 bits (158), Expect = 4e-32 Identities = 181/248 (73%), Gaps = 17/248 (7%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || ||| || | ||||| | ||| || Sbjct 150516 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTAC-GACTTTGCGG 150574 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| | || || |||||||| Sbjct 150575 AGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACC------------ 150622 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| | ||| || | | || |||||||| ||||||||||||||||| |||||||| Sbjct 150623 -CACCTTGTT-AC--GGATGGGTGCCCCTTCTTCCGAAGTTACGGGGCCAGTTTGCCGAG 150678 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | ||||| | || | |||| |||||||||||| | |||||||||||| Sbjct 150679 TTCCTTAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTCTACCAACCTACCTGTGTCGGT 150738 Query 241 TTACGGTA 248 || |||| Sbjct 150739 TTCAGGTA 150746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694389519334