Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1558 250 6e-64 seq1557 107 5e-21 >seq1558 Length=203828 Score = 250 bits (276), Expect = 6e-64 Identities = 308/421 (73%), Gaps = 34/421 (8%) Strand=Plus/Minus Query 13 GCATCTTCACAGCG-ATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||| | | || ||||||| ||| ||| ||||||||||| ||||| Sbjct 43873 GCATCTTCACGGGACAAGTCTATTTCACCGAGCCTCTCTCCGAGACAGCGCCCAGATCGT 43814 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 |||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||| |||| Sbjct 43813 TACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAGGATCGTT 43754 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCAT 191 || |||||| |||||||| |||||||||||| || ||||| || || || || Sbjct 43753 ATAGTTACGACCGCCGTTCACCGGGGCTTCGGTCGTCAGCTT----TTTTCTTACGAAAT 43698 Query 192 ---CAA-----TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243 ||| ||||||||||||||| |||||||||||| ||| ||| | ||| || Sbjct 43697 AACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTACG 43638 Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGC 303 ||||| ||| |||||||||| ||||||||||| |||||||| || ||||| | Sbjct 43637 ACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACC--C 43580 Query 304 ATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTG 363 | |||||| | || || |||||| |||||||||||| | Sbjct 43579 ACCTTGTTACGG------------------ATGGGTGCCCCTTCTTCCGAAGTTACGGGG 43538 Query 364 CCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAAC 423 || |||||| |||||||| |||||||||| || ||||||||||||||| ||||| Sbjct 43537 CCAGTTTGCCGAGTTCCTTAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTCTA-CCAAC 43479 Query 424 C 424 | Sbjct 43478 C 43478 Score = 250 bits (276), Expect = 6e-64 Identities = 308/421 (73%), Gaps = 34/421 (8%) Strand=Plus/Plus Query 13 GCATCTTCACAGCG-ATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||| | | || ||||||| ||| ||| ||||||||||| ||||| Sbjct 150330 GCATCTTCACGGGACAAGTCTATTTCACCGAGCCTCTCTCCGAGACAGCGCCCAGATCGT 150389 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 |||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||| |||| Sbjct 150390 TACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAGGATCGTT 150449 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCAT 191 || |||||| |||||||| |||||||||||| || ||||| || || || || Sbjct 150450 ATAGTTACGACCGCCGTTCACCGGGGCTTCGGTCGTCAGCTT----TTTTCTTACGAAAT 150505 Query 192 ---CAA-----TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243 ||| ||||||||||||||| |||||||||||| ||| ||| | ||| || Sbjct 150506 AACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTACG 150565 Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGC 303 ||||| ||| |||||||||| ||||||||||| |||||||| || ||||| | Sbjct 150566 ACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACC--C 150623 Query 304 ATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTG 363 | |||||| | || || |||||| |||||||||||| | Sbjct 150624 ACCTTGTTACGG------------------ATGGGTGCCCCTTCTTCCGAAGTTACGGGG 150665 Query 364 CCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAAC 423 || |||||| |||||||| |||||||||| || ||||||||||||||| ||||| Sbjct 150666 CCAGTTTGCCGAGTTCCTTAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTCTA-CCAAC 150724 Query 424 C 424 | Sbjct 150725 C 150725 >seq1557 Length=15758 Score = 107 bits (118), Expect = 5e-21 Identities = 110/140 (79%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCA-TCGT 71 |||||| ||| |||||||| ||||| || || | | |||||||| ||| || |||| Sbjct 9823 GCATCTGCACGAAGATTTCAAATTCACAGATTCCATGTTAGAGACAGC-CCGACAGTCGT 9765 Query 72 TACGCCATTCGTGCA-GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 | ||||||| |||| || || | ||| || |||||||||||||||||||||||| || Sbjct 9764 TCAGCCATTCATGCAAGGACGCCAATTAAACGTCAAGGAATTTCGCTACCTTAGGACAGT 9705 Query 131 TATTGTTACGGCCGCCGTTT 150 || ||||| |||||||||| Sbjct 9704 TAGAGTTACTGCCGCCGTTT 9685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260780356736