Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1558 306 8e-81 seq1557 95.1 3e-17 >seq1558 Length=203828 Score = 306 bits (338), Expect = 8e-81 Identities = 292/371 (79%), Gaps = 16/371 (4%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTA--CAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||| |||| | | ||||||||||| || | ||||||| ||||| |||| Sbjct 43873 GCATCTTCAC-GGGACAAGTCTATTTCACCGAGCCTCTCTCCGAGACAGCGCCCAGATCG 43815 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 ||||||||||||||| ||||| ||||||| |||||| ||||||||||||||||||| ||| Sbjct 43814 TTACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAGGATCGT 43755 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTC------TA 178 |||||||||| |||||||| || ||||||| || | |||| || || || Sbjct 43754 TATAGTTACGACCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTT--TTTCTTACGAAATA 43697 Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 || | |||||||||||| |||| |||||||||||||| || ||| || ||||| ||| Sbjct 43696 ACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTACGA 43637 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC---- 294 ||| || || ||||||||||||||||||||||||| ||||||| || ||||| || Sbjct 43636 CTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCCACC 43577 Query 295 -TGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAA 353 ||| | || || |||||||| || ||||||||||| || |||||||||||||||| Sbjct 43576 TTGTTACGGATGGGTGCCCCTTCTTCCGAAGTTACGGGGCCAGTTTGCCGAGTTCCTTAG 43517 Query 354 CAATAGTTCTC 364 | ||||||| Sbjct 43516 AGAGAGTTCTC 43506 Score = 306 bits (338), Expect = 8e-81 Identities = 292/371 (79%), Gaps = 16/371 (4%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTA--CAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||| |||| | | ||||||||||| || | ||||||| ||||| |||| Sbjct 150330 GCATCTTCAC-GGGACAAGTCTATTTCACCGAGCCTCTCTCCGAGACAGCGCCCAGATCG 150388 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 ||||||||||||||| ||||| ||||||| |||||| ||||||||||||||||||| ||| Sbjct 150389 TTACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAGGATCGT 150448 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTC------TA 178 |||||||||| |||||||| || ||||||| || | |||| || || || Sbjct 150449 TATAGTTACGACCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTT--TTTCTTACGAAATA 150506 Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 || | |||||||||||| |||| |||||||||||||| || ||| || ||||| ||| Sbjct 150507 ACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTACGA 150566 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC---- 294 ||| || || ||||||||||||||||||||||||| ||||||| || ||||| || Sbjct 150567 CTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGACCCACC 150626 Query 295 -TGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAA 353 ||| | || || |||||||| || ||||||||||| || |||||||||||||||| Sbjct 150627 TTGTTACGGATGGGTGCCCCTTCTTCCGAAGTTACGGGGCCAGTTTGCCGAGTTCCTTAG 150686 Query 354 CAATAGTTCTC 364 | ||||||| Sbjct 150687 AGAGAGTTCTC 150697 >seq1557 Length=15758 Score = 95.1 bits (104), Expect = 3e-17 Identities = 105/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||| ||| |||| ||| ||||| || || || | ||||||| | | ||||| Sbjct 9823 GCATCTGCACGAAGATTTCAAATTCACAGATTCCATGTTAGAGACAGCCCGACAGTCGTT 9764 Query 67 ACGCCTTTCGTGCG-GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 125 ||| ||| ||| || || | ||| || |||||||||||||||||||||||| ||| Sbjct 9763 CAGCCATTCATGCAAGGACGCCAATTAAACGTCAAGGAATTTCGCTACCTTAGGACAGTT 9704 Query 126 ATAGTTACGGCCGCCGTTT 144 | |||||| |||||||||| Sbjct 9703 AGAGTTACTGCCGCCGTTT 9685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062383447808