Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10-
15] 1,558 sequences; 120,404,952 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq1558 289 9e-76
seq1385 181 3e-43
>seq1558
Length=203828
Score = 289 bits (320), Expect = 9e-76
Identities = 365/493 (74%), Gaps = 19/493 (4%)
Strand=Plus/Plus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66
|||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
Sbjct 39390 CGCAAGAGTGAAACTCAAAGGAATTGACGGGA--CCGCACAAGCGGTGGATTATGTGGAT 39447
Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCT-AGAG 125
|||||||| |||||||||||||||||||| ||||||| || || ||| |||
Sbjct 39448 TAATTCGATACAACGCGAAGAACCTTACCAGGGTTTGACATGTCAAGAACC-TCTCAGAA 39506
Query 126 ATAG-AGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCG 184
|| | ||| | ||| ||| || ||||||| ||||||| |||||||||||||
Sbjct 39507 ATGGGAGGGTGCCCTAACGG---ACTTGAACACAGGTGGTGCATGGCTGTCGTCAGCTCG 39563
Query 185 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC 244
|| |||| ||| |||||||| | ||||||||||||||| ||||||||||
Sbjct 39564 TGCTGTGAAGTGTATAGTTAAGTCTCATAACGAGCGCAACCCTCGTCTTTAGTTGCCA-- 39621
Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304
|| || |||||| ||||||| ||| || | ||||||||||| ||| ||||
Sbjct 39622 ------TTTGGTTCTCTAAAGAGACTGCCAGTG-TAAGCTGGAGGAAGGTGAGGATGACG 39674
Query 305 TCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAG 364
|||| ||| ||||||||||| |||||| ||||||| |||||||| ||||
Sbjct 39675 TCAAGTCAGCATGCCCCTTACATCCTGGGCTTCACACGTAATACAATGGTTGGGACAATC 39734
Query 365 GGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGT 424
| |||| | || ||| | ||| || |||| |||||||||||||||||
Sbjct 39735 AGAAGCG-ACTCGTGAGAGCTAGCGGCTCTGTTAAACCCAACCTCAGTTCGGATTGTAGG 39793
Query 425 CTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGT 483
|||||||||| ||| ||||||| ||||||||||||||||| ||||| || ||||
Sbjct 39794 CTGCAACTCGCCTACATGAAGCCGGAATCGCTAGTAATCGCCAGTCAGCTATATGGCGGT 39853
Query 484 GAATACGTTCCCG 496
|||||||||||||
Sbjct 39854 GAATACGTTCCCG 39866
Score = 289 bits (320), Expect = 9e-76
Identities = 365/493 (74%), Gaps = 19/493 (4%)
Strand=Plus/Minus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66
|||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
Sbjct 154813 CGCAAGAGTGAAACTCAAAGGAATTGACGGGA--CCGCACAAGCGGTGGATTATGTGGAT 154756
Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCT-AGAG 125
|||||||| |||||||||||||||||||| ||||||| || || ||| |||
Sbjct 154755 TAATTCGATACAACGCGAAGAACCTTACCAGGGTTTGACATGTCAAGAACC-TCTCAGAA 154697
Query 126 ATAG-AGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCG 184
|| | ||| | ||| ||| || ||||||| ||||||| |||||||||||||
Sbjct 154696 ATGGGAGGGTGCCCTAACGG---ACTTGAACACAGGTGGTGCATGGCTGTCGTCAGCTCG 154640
Query 185 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC 244
|| |||| ||| |||||||| | ||||||||||||||| ||||||||||
Sbjct 154639 TGCTGTGAAGTGTATAGTTAAGTCTCATAACGAGCGCAACCCTCGTCTTTAGTTGCCA-- 154582
Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304
|| || |||||| ||||||| ||| || | ||||||||||| ||| ||||
Sbjct 154581 ------TTTGGTTCTCTAAAGAGACTGCCAGTG-TAAGCTGGAGGAAGGTGAGGATGACG 154529
Query 305 TCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAG 364
|||| ||| ||||||||||| |||||| ||||||| |||||||| ||||
Sbjct 154528 TCAAGTCAGCATGCCCCTTACATCCTGGGCTTCACACGTAATACAATGGTTGGGACAATC 154469
Query 365 GGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGT 424
| |||| | || ||| | ||| || |||| |||||||||||||||||
Sbjct 154468 AGAAGCG-ACTCGTGAGAGCTAGCGGCTCTGTTAAACCCAACCTCAGTTCGGATTGTAGG 154410
Query 425 CTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGT 483
|||||||||| ||| ||||||| ||||||||||||||||| ||||| || ||||
Sbjct 154409 CTGCAACTCGCCTACATGAAGCCGGAATCGCTAGTAATCGCCAGTCAGCTATATGGCGGT 154350
Query 484 GAATACGTTCCCG 496
|||||||||||||
Sbjct 154349 GAATACGTTCCCG 154337
>seq1385
Length=40102
Score = 181 bits (200), Expect = 3e-43
Identities = 161/200 (81%), Gaps = 1/200 (1%)
Strand=Plus/Minus
Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357
|| |||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct 40076 GATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGG 40017
Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417
|||||||| |||| |||||||| ||| || ||| ||| || |||||||||||
Sbjct 40016 GACAAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGA 39957
Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATG 476
||| || |||||||||| || ||||||| ||||||||||||||||| | |||| |||
Sbjct 39956 TTGCAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATA 39897
Query 477 CTACGGTGAATACGTTCCCG 496
| |||||||| ||||||||
Sbjct 39896 CGGCGGTGAATTCGTTCCCG 39877
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503976567680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |