Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1558 289 9e-76 seq1385 181 3e-43 >seq1558 Length=203828 Score = 289 bits (320), Expect = 9e-76 Identities = 365/493 (74%), Gaps = 19/493 (4%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| ||||||||||||||||||||||| |||||||||||||||| |||||| | Sbjct 39390 CGCAAGAGTGAAACTCAAAGGAATTGACGGGA--CCGCACAAGCGGTGGATTATGTGGAT 39447 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCT-AGAG 125 |||||||| |||||||||||||||||||| ||||||| || || ||| ||| Sbjct 39448 TAATTCGATACAACGCGAAGAACCTTACCAGGGTTTGACATGTCAAGAACC-TCTCAGAA 39506 Query 126 ATAG-AGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCG 184 || | ||| | ||| ||| || ||||||| ||||||| ||||||||||||| Sbjct 39507 ATGGGAGGGTGCCCTAACGG---ACTTGAACACAGGTGGTGCATGGCTGTCGTCAGCTCG 39563 Query 185 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC 244 || |||| ||| |||||||| | ||||||||||||||| |||||||||| Sbjct 39564 TGCTGTGAAGTGTATAGTTAAGTCTCATAACGAGCGCAACCCTCGTCTTTAGTTGCCA-- 39621 Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304 || || |||||| ||||||| ||| || | ||||||||||| ||| |||| Sbjct 39622 ------TTTGGTTCTCTAAAGAGACTGCCAGTG-TAAGCTGGAGGAAGGTGAGGATGACG 39674 Query 305 TCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAG 364 |||| ||| ||||||||||| |||||| ||||||| |||||||| |||| Sbjct 39675 TCAAGTCAGCATGCCCCTTACATCCTGGGCTTCACACGTAATACAATGGTTGGGACAATC 39734 Query 365 GGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGT 424 | |||| | || ||| | ||| || |||| ||||||||||||||||| Sbjct 39735 AGAAGCG-ACTCGTGAGAGCTAGCGGCTCTGTTAAACCCAACCTCAGTTCGGATTGTAGG 39793 Query 425 CTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGT 483 |||||||||| ||| ||||||| ||||||||||||||||| ||||| || |||| Sbjct 39794 CTGCAACTCGCCTACATGAAGCCGGAATCGCTAGTAATCGCCAGTCAGCTATATGGCGGT 39853 Query 484 GAATACGTTCCCG 496 ||||||||||||| Sbjct 39854 GAATACGTTCCCG 39866 Score = 289 bits (320), Expect = 9e-76 Identities = 365/493 (74%), Gaps = 19/493 (4%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| ||||||||||||||||||||||| |||||||||||||||| |||||| | Sbjct 154813 CGCAAGAGTGAAACTCAAAGGAATTGACGGGA--CCGCACAAGCGGTGGATTATGTGGAT 154756 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCT-AGAG 125 |||||||| |||||||||||||||||||| ||||||| || || ||| ||| Sbjct 154755 TAATTCGATACAACGCGAAGAACCTTACCAGGGTTTGACATGTCAAGAACC-TCTCAGAA 154697 Query 126 ATAG-AGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCG 184 || | ||| | ||| ||| || ||||||| ||||||| ||||||||||||| Sbjct 154696 ATGGGAGGGTGCCCTAACGG---ACTTGAACACAGGTGGTGCATGGCTGTCGTCAGCTCG 154640 Query 185 TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATC 244 || |||| ||| |||||||| | ||||||||||||||| |||||||||| Sbjct 154639 TGCTGTGAAGTGTATAGTTAAGTCTCATAACGAGCGCAACCCTCGTCTTTAGTTGCCA-- 154582 Query 245 ATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACG 304 || || |||||| ||||||| ||| || | ||||||||||| ||| |||| Sbjct 154581 ------TTTGGTTCTCTAAAGAGACTGCCAGTG-TAAGCTGGAGGAAGGTGAGGATGACG 154529 Query 305 TCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAG 364 |||| ||| ||||||||||| |||||| ||||||| |||||||| |||| Sbjct 154528 TCAAGTCAGCATGCCCCTTACATCCTGGGCTTCACACGTAATACAATGGTTGGGACAATC 154469 Query 365 GGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGT 424 | |||| | || ||| | ||| || |||| ||||||||||||||||| Sbjct 154468 AGAAGCG-ACTCGTGAGAGCTAGCGGCTCTGTTAAACCCAACCTCAGTTCGGATTGTAGG 154410 Query 425 CTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGT 483 |||||||||| ||| ||||||| ||||||||||||||||| ||||| || |||| Sbjct 154409 CTGCAACTCGCCTACATGAAGCCGGAATCGCTAGTAATCGCCAGTCAGCTATATGGCGGT 154350 Query 484 GAATACGTTCCCG 496 ||||||||||||| Sbjct 154349 GAATACGTTCCCG 154337 >seq1385 Length=40102 Score = 181 bits (200), Expect = 3e-43 Identities = 161/200 (81%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | Sbjct 40076 GATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGG 40017 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 |||||||| |||| |||||||| ||| || ||| ||| || ||||||||||| Sbjct 40016 GACAAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGA 39957 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATG 476 ||| || |||||||||| || ||||||| ||||||||||||||||| | |||| ||| Sbjct 39956 TTGCAGGCTGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCCATA 39897 Query 477 CTACGGTGAATACGTTCCCG 496 | |||||||| |||||||| Sbjct 39896 CGGCGGTGAATTCGTTCCCG 39877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503976567680