Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1163 307 2e-81 seq1536 136 6e-30 >seq1163 Length=8794 Score = 307 bits (340), Expect = 2e-81 Identities = 225/258 (87%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7662 CTCGTTGGTCGCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 7721 Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC-C 121 ||||||| |||||| ||||||||||||| | ||||||||||||||||||||| | || | Sbjct 7722 CTGTTATCGCCTCATACTTCCATTGGCTAAACGCCAATAGTCCCTCTAAGAAGTCGGCGC 7781 Query 122 ACCAACCATAGTCGATG-GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 ||| || ||||| | |||||||||||| | ||||||||||||||| |||||| | Sbjct 7782 ACC--GCAGGTGCGATGCTGACTATTTAGCAGGCTGAGGTCTCGTTCGTTACCGGAATCA 7839 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 ||| ||||| || |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 7840 ACCTGACAAGGCAACCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGA 7899 Query 241 AAGAGCTATCAATCTGTC 258 ||||||| |||||||||| Sbjct 7900 AAGAGCTCTCAATCTGTC 7917 >seq1536 Length=1886782 Score = 136 bits (150), Expect = 6e-30 Identities = 89/98 (91%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1696916 CTCGTTGGTCGCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 1696975 Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAAT 100 ||||||| |||||| ||||||||||||| | |||||| Sbjct 1696976 CTGTTATCGCCTCATACTTCCATTGGCTAAACGCCAAT 1697013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796787973798