Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10-
15] 1,558 sequences; 120,404,952 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq1558 197 3e-48
>seq1558
Length=203828
Score = 197 bits (218), Expect = 3e-48
Identities = 180/227 (79%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172
|||||| |||| ||||||||| ||||||| |||||| ||| ||||||||||||
Sbjct 44062 GACAGTTTCAGGTGGGCAGTTTATTTGGGGCGAATGCCTCCTAAAAGGTAACGGAGGCGT 44121
Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232
||||| | ||||||| |||| ||||| || | |||| ||||||||||||| | |
Sbjct 44122 GCAAAGGTTCCCTCAGTCTGGACGGAAATCAGACATTGAGTGTAAAGGCAAAAGGGAGCT 44181
Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292
||||||| | ||| |||||| ||||||| |||||| ||| |||| ||||||| ||||||
Sbjct 44182 TGACTGCAAGACCTACAAGTCGAGCAGGGGCGAAAGCCGGCCTTAGTGATCCGACGGTGC 44241
Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 44242 CGCGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 44288
Score = 197 bits (218), Expect = 3e-48
Identities = 180/227 (79%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172
|||||| |||| ||||||||| ||||||| |||||| ||| ||||||||||||
Sbjct 150141 GACAGTTTCAGGTGGGCAGTTTATTTGGGGCGAATGCCTCCTAAAAGGTAACGGAGGCGT 150082
Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232
||||| | ||||||| |||| ||||| || | |||| ||||||||||||| | |
Sbjct 150081 GCAAAGGTTCCCTCAGTCTGGACGGAAATCAGACATTGAGTGTAAAGGCAAAAGGGAGCT 150022
Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292
||||||| | ||| |||||| ||||||| |||||| ||| |||| ||||||| ||||||
Sbjct 150021 TGACTGCAAGACCTACAAGTCGAGCAGGGGCGAAAGCCGGCCTTAGTGATCCGACGGTGC 149962
Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 149961 CGCGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 149915
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982384694208
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |