Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1558 205 2e-50 seq1518 105 1e-20 >seq1558 Length=203828 Score = 205 bits (226), Expect = 2e-50 Identities = 249/335 (74%), Gaps = 16/335 (5%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| | || || ||||||| | |||||||||||| || || |||| |||||| Sbjct 38955 TTTACGACCCACAGGCCTTCTTCCTG-CACGCGGCATTG-CTCCGTC--GCTTGCGCCCA 38900 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 38899 TTGCGAAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 38840 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTA-CCTCA 180 ||| ||||||||||||||||||||| ||| | |||| ||||||| ||| ||| || || Sbjct 38839 GTGGCTGATCATCCTCTCAGACCAGCTACTGCTCGTGGCCTTGGGAGGCCGTTACCCCCA 38780 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| ||| | || | ||| || | | | | | ||| Sbjct 38779 CCAACTAGCTAATCAGACGCAAGCCCCTCT-AT----------CGGCGGTTTTTCACCTT 38731 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || | | | | ||||| ||||||||| | |||||| || |||||||||| | || Sbjct 38730 TCACTCCTCAGCTGTATGGGGTATTAGCAACAGTTTCCCAATGTTATCCCCCTCCGATAG 38671 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 | || ||| || || |||| ||||||| |||| || Sbjct 38670 GTAGGTTCTTACGCGTTACGCACCCGTTCGCCACT 38636 Score = 205 bits (226), Expect = 2e-50 Identities = 249/335 (74%), Gaps = 16/335 (5%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||| | || || ||||||| | |||||||||||| || || |||| |||||| Sbjct 155248 TTTACGACCCACAGGCCTTCTTCCTG-CACGCGGCATTG-CTCCGTC--GCTTGCGCCCA 155303 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 155304 TTGCGAAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 155363 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTA-CCTCA 180 ||| ||||||||||||||||||||| ||| | |||| ||||||| ||| ||| || || Sbjct 155364 GTGGCTGATCATCCTCTCAGACCAGCTACTGCTCGTGGCCTTGGGAGGCCGTTACCCCCA 155423 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| ||| | || | ||| || | | | | | ||| Sbjct 155424 CCAACTAGCTAATCAGACGCAAGCCCCTCT-AT----------CGGCGGTTTTTCACCTT 155472 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || | | | | ||||| ||||||||| | |||||| || |||||||||| | || Sbjct 155473 TCACTCCTCAGCTGTATGGGGTATTAGCAACAGTTTCCCAATGTTATCCCCCTCCGATAG 155532 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 | || ||| || || |||| ||||||| |||| || Sbjct 155533 GTAGGTTCTTACGCGTTACGCACCCGTTCGCCACT 155567 >seq1518 Length=1033048 Score = 105 bits (116), Expect = 1e-20 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 110 CTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAG 169 |||||| |||||||| ||||||||||||||||||||| ||| |||||| ||||||| || Sbjct 674557 CTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTGGCCTTGGGAAG 674498 Query 170 CCATTA-CCTCACCAACTAGCTAATCCGAC 198 || ||| || |||||| ||||||||| ||| Sbjct 674497 CCGTTACCCCCACCAATTAGCTAATCAGAC 674468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071983298240