Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1558 300 6e-79 seq1385 140 1e-30 seq1557 77.0 1e-11 seq646 75.2 4e-11 seq55 75.2 4e-11 >seq1558 Length=203828 Score = 300 bits (332), Expect = 6e-79 Identities = 351/470 (75%), Gaps = 22/470 (5%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||| ||||||| | | |||| |||||| |||| Sbjct 42686 CGCTGCGCCTCAACGCATTTCGGGGAGATCCAGCTAGCTCCGAGTTCGATTGGAATTTCT 42627 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 ||||||| ||||| |||||| | | |||||||| | || ||||||| ||||||| || Sbjct 42626 CCCCTATTCACAGCTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGACCTCCACTTGG 42567 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGT 313 | |||||| |||||| |||| ||||| ||||||||| | |||||||| | || Sbjct 42566 TGTTACCCAAGCTTCATCCTGGCCATGAATAGATCACCCGGGTTCGGGTCCATAAGAAGT 42507 Query 314 G-CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCA---CACGGGTTA 369 | ||| | | |||||||||| |||||||||||||| |||| || | || ||| Sbjct 42506 GACCATT--TGCGCCCTATTCAGACTCGCTTTCGCTTGGGCT-CCGGATTTTACTCCTTA 42450 Query 370 ACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 ||| || || | | || |||| |||||||||||||| |||||||| ||||| Sbjct 42449 ACCCAGCCACTC-CCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAC----- 42396 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 | ||| | ||||| || | |||| ||| | ||||||| || ||||||||| Sbjct 42395 -------AAGCATTCTTGCTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCAC 42343 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 ||||| ||||||| ||||||||||||||||| |||||| | ||||||||||||| | Sbjct 42342 TCCCCAACAGGGGTTCTTTTCACCTTTCCCTCGTGGTACTATTTCGCTATCGGTCACTCA 42283 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| |||| |||||||| | |||||||||| |||||| Sbjct 42282 GGAGTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGATTTCA 42233 Score = 300 bits (332), Expect = 6e-79 Identities = 351/470 (75%), Gaps = 22/470 (5%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||| ||||||| | | |||| |||||| |||| Sbjct 151517 CGCTGCGCCTCAACGCATTTCGGGGAGATCCAGCTAGCTCCGAGTTCGATTGGAATTTCT 151576 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 ||||||| ||||| |||||| | | |||||||| | || ||||||| ||||||| || Sbjct 151577 CCCCTATTCACAGCTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGACCTCCACTTGG 151636 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGT 313 | |||||| |||||| |||| ||||| ||||||||| | |||||||| | || Sbjct 151637 TGTTACCCAAGCTTCATCCTGGCCATGAATAGATCACCCGGGTTCGGGTCCATAAGAAGT 151696 Query 314 G-CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCA---CACGGGTTA 369 | ||| | | |||||||||| |||||||||||||| |||| || | || ||| Sbjct 151697 GACCATT--TGCGCCCTATTCAGACTCGCTTTCGCTTGGGCT-CCGGATTTTACTCCTTA 151753 Query 370 ACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 ||| || || | | || |||| |||||||||||||| |||||||| ||||| Sbjct 151754 ACCCAGCCACTC-CCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAC----- 151807 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 | ||| | ||||| || | |||| ||| | ||||||| || ||||||||| Sbjct 151808 -------AAGCATTCTTGCTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCAC 151860 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 ||||| ||||||| ||||||||||||||||| |||||| | ||||||||||||| | Sbjct 151861 TCCCCAACAGGGGTTCTTTTCACCTTTCCCTCGTGGTACTATTTCGCTATCGGTCACTCA 151920 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| |||| |||||||| | |||||||||| |||||| Sbjct 151921 GGAGTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGATTTCA 151970 >seq1385 Length=40102 Score = 140 bits (154), Expect = 1e-30 Identities = 157/209 (75%), Gaps = 11/209 (5%) Strand=Plus/Plus Query 391 TCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTC 450 |||| |||||||||||||| |||||||| |||| | || ||| | ||| Sbjct 116 TCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGA--GCCCCG----GGCTC-----CTC 164 Query 451 CGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTC 510 | || | ||| || | ||||||| || ||||||||||||||| ||||| |||||| Sbjct 165 CCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTC 224 Query 511 ACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGG 570 ||| ||||||||||||||| | |||||||||||||| |||||||||||| ||| || Sbjct 225 ACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGG 284 Query 571 TGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||| | |||||||||| ||| || Sbjct 285 TGGTCCTTGCTGATTCACACGGGATTCCA 313 >seq1557 Length=15758 Score = 77.0 bits (84), Expect = 1e-11 Identities = 83/109 (76%), Gaps = 6/109 (6%) Strand=Plus/Minus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 |||| ||| |||||| || |||||||||| || | ||||||||||||||||||||| Sbjct 11533 ACCTGAATAGATTTCGCAGAAAACCAGCTATTACCGAACTTGATTGGCCTTTCACCCCTA 11474 Query 202 TCCACAGGTCATCCCCTCAGT---TTTCAACCTAAGTGGGTTCGGTCCT 247 |||| |||||||| ||| || |||| | |||||||||||| Sbjct 11473 GCCACGTGTCATCCC---AGTCTCTTGCAACAGACACGGGTTCGGTCCT 11428 >seq646 Length=3696 Score = 75.2 bits (82), Expect = 4e-11 Identities = 56/65 (86%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCAC-CAAGGAGTATTTAG 560 || ||||||| |||||||||||||||||||| ||||||||||| | | | ||||||||| Sbjct 2647 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCNGGCAGTATTTAG 2588 Query 561 GCTTA 565 |||| Sbjct 2587 CCTTA 2583 >seq55 Length=1051 Score = 75.2 bits (82), Expect = 4e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| | | ||||||||| Sbjct 961 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGGCAGTATTTAGC 902 Query 562 CTTA 565 |||| Sbjct 901 CTTA 898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817571681792