Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1558 230 6e-58 seq1385 163 7e-38 seq55 78.8 2e-12 >seq1558 Length=203828 Score = 230 bits (254), Expect = 6e-58 Identities = 318/424 (75%), Gaps = 21/424 (5%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || || ||||| |||| |||| | ||||||||| |||||||||| |||||| || | Sbjct 42624 CCTATTCACAGCTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGACCTCCACTTGG 42567 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||||||| ||| || |||| |||| | ||||||| ||||| || |||||| || Sbjct 42566 T-GTTACCCAAGCTT-CATCCTGGCCAT-GAATAGATCACCCGGGTT-CGGGTCCATAAG 42511 Query 124 CCAGCGACTAGA--CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCC----TATTCG 177 || ||| | ||||||| | ||||||||||| |||| | |||| || || Sbjct 42510 A-AGTGACCATTTGCGCCCTATTCAGACTCGCTTT-CGCTTGGGCTCCGGATTTTACTCC 42453 Query 178 GTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC 237 |||| | |||||| ||||||||| | | |||| | ||| ||| |||| ||||| Sbjct 42452 -TTAACCCA-GCCACTCCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCACA 42395 Query 238 CAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCT 297 | || | | |||||||||||||| ||||||||||||| | ||||||||||||||| Sbjct 42394 -AGCATTCTTG-CTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCACTCCCCA 42337 Query 298 CTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGT 357 | |||||||||||| |||||||||| ||||||| ||| |||||||||| |||| ||| Sbjct 42336 A-CAGGGGTTCTTTTCACCTTTCCCTCGTGGTACTATTTCGCTATCGGTCACTCAGGAGT 42278 Query 358 ATTTAGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTA 416 |||||||||| |||| |||||| | | ||||| || |||| ||||| || | ||| Sbjct 42277 ATTTAGCCTTACGAGG-TGGTCCTCGCTGATTCACACGGGATTTCACGTGCCCCATGCTA 42219 Query 417 CTCG 420 |||| Sbjct 42218 CTCG 42215 Score = 230 bits (254), Expect = 6e-58 Identities = 318/424 (75%), Gaps = 21/424 (5%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || || ||||| |||| |||| | ||||||||| |||||||||| |||||| || | Sbjct 151579 CCTATTCACAGCTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGACCTCCACTTGG 151636 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||||||| ||| || |||| |||| | ||||||| ||||| || |||||| || Sbjct 151637 T-GTTACCCAAGCTT-CATCCTGGCCAT-GAATAGATCACCCGGGTT-CGGGTCCATAAG 151692 Query 124 CCAGCGACTAGA--CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCC----TATTCG 177 || ||| | ||||||| | ||||||||||| |||| | |||| || || Sbjct 151693 A-AGTGACCATTTGCGCCCTATTCAGACTCGCTTT-CGCTTGGGCTCCGGATTTTACTCC 151750 Query 178 GTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC 237 |||| | |||||| ||||||||| | | |||| | ||| ||| |||| ||||| Sbjct 151751 -TTAACCCA-GCCACTCCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCACA 151808 Query 238 CAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCT 297 | || | | |||||||||||||| ||||||||||||| | ||||||||||||||| Sbjct 151809 -AGCATTCTTG-CTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCACTCCCCA 151866 Query 298 CTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGT 357 | |||||||||||| |||||||||| ||||||| ||| |||||||||| |||| ||| Sbjct 151867 A-CAGGGGTTCTTTTCACCTTTCCCTCGTGGTACTATTTCGCTATCGGTCACTCAGGAGT 151925 Query 358 ATTTAGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTA 416 |||||||||| |||| |||||| | | ||||| || |||| ||||| || | ||| Sbjct 151926 ATTTAGCCTTACGAGG-TGGTCCTCGCTGATTCACACGGGATTTCACGTGCCCCATGCTA 151984 Query 417 CTCG 420 |||| Sbjct 151985 CTCG 151988 >seq1385 Length=40102 Score = 163 bits (180), Expect = 7e-38 Identities = 208/279 (75%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 145 AAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAG 202 |||||||||||| ||||||| |||| | ||| |||| | ||||||| || || Sbjct 58 AAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA-GCCACTGCCTATGAG 115 Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC-TCCCACTGCTT 261 |||| | | |||| | ||| ||| |||| |||| | | | | | ||||||||||| Sbjct 116 TCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGGGCTCCTCCCACTGCTT 173 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 | || |||||||||| | ||||||||||||||| | |||||||||||| || |||| Sbjct 174 GGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTCC 232 Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCC 381 |||||||||||| ||| |||||||||| ||| |||||||||||||| | | |||||| Sbjct 233 CTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTT 292 Query 382 CCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | ||||| || || | ||||| || | ||||||| Sbjct 293 GCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 331 >seq55 Length=1051 Score = 78.8 bits (86), Expect = 2e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||| |||| ||||||||| || | |||||||||| Sbjct 961 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGGCAGTATTTAGC 902 Query 365 CTTGGA 370 ||| || Sbjct 901 CTTAGA 896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241580655872