Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10-
15] 1,558 sequences; 120,404,952 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq1558 230 6e-58
seq1385 163 7e-38
seq55 78.8 2e-12
>seq1558
Length=203828
Score = 230 bits (254), Expect = 6e-58
Identities = 318/424 (75%), Gaps = 21/424 (5%)
Strand=Plus/Minus
Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63
|| || ||||| |||| |||| | ||||||||| |||||||||| |||||| || |
Sbjct 42624 CCTATTCACAGCTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGACCTCCACTTGG 42567
Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123
| ||||||||| ||| || |||| |||| | ||||||| ||||| || |||||| ||
Sbjct 42566 T-GTTACCCAAGCTT-CATCCTGGCCAT-GAATAGATCACCCGGGTT-CGGGTCCATAAG 42511
Query 124 CCAGCGACTAGA--CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCC----TATTCG 177
|| ||| | ||||||| | ||||||||||| |||| | |||| || ||
Sbjct 42510 A-AGTGACCATTTGCGCCCTATTCAGACTCGCTTT-CGCTTGGGCTCCGGATTTTACTCC 42453
Query 178 GTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC 237
|||| | |||||| ||||||||| | | |||| | ||| ||| |||| |||||
Sbjct 42452 -TTAACCCA-GCCACTCCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCACA 42395
Query 238 CAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCT 297
| || | | |||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 42394 -AGCATTCTTG-CTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCACTCCCCA 42337
Query 298 CTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGT 357
| |||||||||||| |||||||||| ||||||| ||| |||||||||| |||| |||
Sbjct 42336 A-CAGGGGTTCTTTTCACCTTTCCCTCGTGGTACTATTTCGCTATCGGTCACTCAGGAGT 42278
Query 358 ATTTAGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTA 416
|||||||||| |||| |||||| | | ||||| || |||| ||||| || | |||
Sbjct 42277 ATTTAGCCTTACGAGG-TGGTCCTCGCTGATTCACACGGGATTTCACGTGCCCCATGCTA 42219
Query 417 CTCG 420
||||
Sbjct 42218 CTCG 42215
Score = 230 bits (254), Expect = 6e-58
Identities = 318/424 (75%), Gaps = 21/424 (5%)
Strand=Plus/Plus
Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63
|| || ||||| |||| |||| | ||||||||| |||||||||| |||||| || |
Sbjct 151579 CCTATTCACAGCTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGACCTCCACTTGG 151636
Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123
| ||||||||| ||| || |||| |||| | ||||||| ||||| || |||||| ||
Sbjct 151637 T-GTTACCCAAGCTT-CATCCTGGCCAT-GAATAGATCACCCGGGTT-CGGGTCCATAAG 151692
Query 124 CCAGCGACTAGA--CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCC----TATTCG 177
|| ||| | ||||||| | ||||||||||| |||| | |||| || ||
Sbjct 151693 A-AGTGACCATTTGCGCCCTATTCAGACTCGCTTT-CGCTTGGGCTCCGGATTTTACTCC 151750
Query 178 GTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC 237
|||| | |||||| ||||||||| | | |||| | ||| ||| |||| |||||
Sbjct 151751 -TTAACCCA-GCCACTCCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCACA 151808
Query 238 CAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCT 297
| || | | |||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 151809 -AGCATTCTTG-CTCCCACTGCTTGTCAGCATACGGTTTCATGTTCTATTTCACTCCCCA 151866
Query 298 CTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGT 357
| |||||||||||| |||||||||| ||||||| ||| |||||||||| |||| |||
Sbjct 151867 A-CAGGGGTTCTTTTCACCTTTCCCTCGTGGTACTATTTCGCTATCGGTCACTCAGGAGT 151925
Query 358 ATTTAGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTA 416
|||||||||| |||| |||||| | | ||||| || |||| ||||| || | |||
Sbjct 151926 ATTTAGCCTTACGAGG-TGGTCCTCGCTGATTCACACGGGATTTCACGTGCCCCATGCTA 151984
Query 417 CTCG 420
||||
Sbjct 151985 CTCG 151988
>seq1385
Length=40102
Score = 163 bits (180), Expect = 7e-38
Identities = 208/279 (75%), Gaps = 8/279 (3%)
Strand=Plus/Plus
Query 145 AAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAG 202
|||||||||||| ||||||| |||| | ||| |||| | ||||||| || ||
Sbjct 58 AAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA-GCCACTGCCTATGAG 115
Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC-TCCCACTGCTT 261
|||| | | |||| | ||| ||| |||| |||| | | | | | |||||||||||
Sbjct 116 TCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGGGCTCCTCCCACTGCTT 173
Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321
| || |||||||||| | ||||||||||||||| | |||||||||||| || ||||
Sbjct 174 GGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTCC 232
Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCC 381
|||||||||||| ||| |||||||||| ||| |||||||||||||| | | ||||||
Sbjct 233 CTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTT 292
Query 382 CCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
| ||||| || || | ||||| || | |||||||
Sbjct 293 GCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 331
>seq55
Length=1051
Score = 78.8 bits (86), Expect = 2e-12
Identities = 57/66 (86%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364
||||||||| ||||||||||||||||| |||| ||||||||| || | ||||||||||
Sbjct 961 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGGCAGTATTTAGC 902
Query 365 CTTGGA 370
||| ||
Sbjct 901 CTTAGA 896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241580655872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |