Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1558 210 5e-52 >seq1558 Length=203828 Score = 210 bits (232), Expect = 5e-52 Identities = 296/410 (72%), Gaps = 17/410 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||| ||||| | ||||| | |||||| || |||| |||| ||| ||| | Sbjct 43228 CGACGACGCCGTTTGGCCTAGTCTTAGGTCCTGACTAACCCCCCATGGACGAACCTAGTG 43169 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 43168 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 43109 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 |||||||||| ||| || |||| | | || | || | | ||||||| || Sbjct 43108 ACATTCTCACTTCCGCTTCG--TCCATCCC-CACTTACGTGAAAACTTCACCCGAGAGCG 43052 Query 178 GA-CGCTCCCCTACCCA--------ACCACACAGGTTGCCACAGCTTCGGCGGATAACTT 228 || |||||||||||| | | | | | | |||||||||||| | | |||| Sbjct 43051 GAACGCTCCCCTACCTATAATTTATATAATAAATTATATCACAGCTTCGGCAGGTCACTT 42992 Query 229 AAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTC 288 | ||| || |||||||||||| | | ||| ||||||||||||||||||||||||| Sbjct 42991 AGTCCCGGC--CATTATCGGCGCAAGAACGCTTTACCAGTGAGCTATTACGCACTCTTTG 42934 Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 |||| |||||||||| |||| |||||||||||||| | ||| |||||||||| ||| Sbjct 42933 AAGGGTGGCTGCTTCTAAGCAAACCTCCTGGTTGTTTCAGCATTCTCACATCCTTTTCCA 42874 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || ||| |||| |||||||||||||||| ||||||||||||||||||||| Sbjct 42873 CTTAGTGACCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCT 42824 Score = 210 bits (232), Expect = 5e-52 Identities = 296/410 (72%), Gaps = 17/410 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||| ||||| | ||||| | |||||| || |||| |||| ||| ||| | Sbjct 150975 CGACGACGCCGTTTGGCCTAGTCTTAGGTCCTGACTAACCCCCCATGGACGAACCTAGTG 151034 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 151035 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCG 151094 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 |||||||||| ||| || |||| | | || | || | | ||||||| || Sbjct 151095 ACATTCTCACTTCCGCTTCG--TCCATCCC-CACTTACGTGAAAACTTCACCCGAGAGCG 151151 Query 178 GA-CGCTCCCCTACCCA--------ACCACACAGGTTGCCACAGCTTCGGCGGATAACTT 228 || |||||||||||| | | | | | | |||||||||||| | | |||| Sbjct 151152 GAACGCTCCCCTACCTATAATTTATATAATAAATTATATCACAGCTTCGGCAGGTCACTT 151211 Query 229 AAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTC 288 | ||| || |||||||||||| | | ||| ||||||||||||||||||||||||| Sbjct 151212 AGTCCCGGC--CATTATCGGCGCAAGAACGCTTTACCAGTGAGCTATTACGCACTCTTTG 151269 Query 289 AAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCA 348 |||| |||||||||| |||| |||||||||||||| | ||| |||||||||| ||| Sbjct 151270 AAGGGTGGCTGCTTCTAAGCAAACCTCCTGGTTGTTTCAGCATTCTCACATCCTTTTCCA 151329 Query 349 CTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || ||| |||| |||||||||||||||| ||||||||||||||||||||| Sbjct 151330 CTTAGTGACCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCT 151379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177581652992