Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1385 95.1 1e-17 seq1558 77.0 3e-12 >seq1385 Length=40102 Score = 95.1 bits (104), Expect = 1e-17 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 39940 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 39999 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 40000 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 40059 Query 122 GAGGACTTGACGTCATC 138 || |||||||||||||| Sbjct 40060 GATGACTTGACGTCATC 40076 >seq1558 Length=203828 Score = 77.0 bits (84), Expect = 3e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 82 ACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCC 141 |||||||||| ||||||||||||| |||||| |||| ||||||||||||||| | Sbjct 39724 ACCATTGTATTACGTGTGAAGCCCAGGATGTAAGGGGCATGCTGACTTGACGTCATCCTC 39665 Query 142 ACCTTCCTCC 151 |||||||||| Sbjct 39664 ACCTTCCTCC 39655 Score = 77.0 bits (84), Expect = 3e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 82 ACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCC 141 |||||||||| ||||||||||||| |||||| |||| ||||||||||||||| | Sbjct 154479 ACCATTGTATTACGTGTGAAGCCCAGGATGTAAGGGGCATGCTGACTTGACGTCATCCTC 154538 Query 142 ACCTTCCTCC 151 |||||||||| Sbjct 154539 ACCTTCCTCC 154548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415993721260