Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq1558 215 9e-54 >seq1558 Length=203828 Score = 215 bits (238), Expect = 9e-54 Identities = 226/292 (77%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| ||||||| ||||| ||||||| | | |||||| |||||||||||||||||| Sbjct 39275 CCCA-GCTTTCGTCTCTCAGTGTCAGTTTCGGCCCAGCAGAGCGCCTTCGCCACTGGTGT 39217 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||| |||||||||||||||||| |||| |||||||| |||| || | | || Sbjct 39216 TCCTCCATATCTCTACGCATTTCACCGCTCCACATGGAATTCCCTCTGCCCCTACCGTAC 39157 Query 121 TCAAGAAAAACAGT-TTCAAATGCAGGCTATGGGTTGAGCCCATAGT-TTTCACATCTGA 178 ||||| ||| || ||||| || |||||||||| | || ||| |||| || Sbjct 39156 TCAAGCTCGTGAGTACTCCAATGCCGGTCCAAGGTTGAGCCC-TGGTATTTGACATTAGA 39098 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| | || |||||| | |||||| |||||| | | |||| ||||||||| ||| Sbjct 39097 CTTTACGAGCCACCTACAGACGCTTTACGCCCAATCATTGCGGACAACGCTTGCACCCTC 39038 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| ||||||||||||| || Sbjct 39037 TGTATTACCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCCTCAGATA 38986 Score = 215 bits (238), Expect = 9e-54 Identities = 226/292 (77%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| ||||||| ||||| ||||||| | | |||||| |||||||||||||||||| Sbjct 154928 CCCA-GCTTTCGTCTCTCAGTGTCAGTTTCGGCCCAGCAGAGCGCCTTCGCCACTGGTGT 154986 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||| |||||||||||||||||| |||| |||||||| |||| || | | || Sbjct 154987 TCCTCCATATCTCTACGCATTTCACCGCTCCACATGGAATTCCCTCTGCCCCTACCGTAC 155046 Query 121 TCAAGAAAAACAGT-TTCAAATGCAGGCTATGGGTTGAGCCCATAGT-TTTCACATCTGA 178 ||||| ||| || ||||| || |||||||||| | || ||| |||| || Sbjct 155047 TCAAGCTCGTGAGTACTCCAATGCCGGTCCAAGGTTGAGCCC-TGGTATTTGACATTAGA 155105 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| | || |||||| | |||||| |||||| | | |||| ||||||||| ||| Sbjct 155106 CTTTACGAGCCACCTACAGACGCTTTACGCCCAATCATTGCGGACAACGCTTGCACCCTC 155165 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| ||||||||||||| || Sbjct 155166 TGTATTACCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCCTCAGATA 155217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828787490818