Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1558 123 4e-26 >seq1558 Length=203828 Score = 123 bits (136), Expect = 4e-26 Identities = 83/93 (89%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 ||||| |||||||||||| ||| || ||||||||||||||||||||||||||| |||||| Sbjct 44431 ACGTTTTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACCCTTCGGACCT 44372 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||| || |||||| || |||||||||||| Sbjct 44371 ACTACAGACCGAGGATGTGATGAGCCGACATCG 44339 Score = 123 bits (136), Expect = 4e-26 Identities = 83/93 (89%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 ||||| |||||||||||| ||| || ||||||||||||||||||||||||||| |||||| Sbjct 149772 ACGTTTTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACCCTTCGGACCT 149831 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||| || |||||| || |||||||||||| Sbjct 149832 ACTACAGACCGAGGATGTGATGAGCCGACATCG 149864 Score = 96.9 bits (106), Expect = 5e-18 Identities = 128/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 9 GCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCA 68 ||||| ||||||||| |||||| ||||| | ||| | ||||| |||||| | | Sbjct 45493 GCTTCCTACTTAGATGCTTTCAGCAGTTATCTAT-CCATGCGTAGCTACCCAGCGTTTCC 45435 Query 69 C-TTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 | |||| | | ||||||| ||| | || ||||| | | ||||||||||||||| | | Sbjct 45434 CATTGGAATGAGAACTGGTACACAATTGGCATGTCCTTTCAGGTCCTCTCGTACTATGAA 45375 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 ||| ||||||| || ||||| || |||||| ||||| ||||||||| || Sbjct 45374 AGGCTACTCTCAATGCTCTAACGCCTACACCGGATATGGACCAAACTGTCTCACG 45320 Score = 96.9 bits (106), Expect = 5e-18 Identities = 128/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 9 GCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCA 68 ||||| ||||||||| |||||| ||||| | ||| | ||||| |||||| | | Sbjct 148710 GCTTCCTACTTAGATGCTTTCAGCAGTTATCTAT-CCATGCGTAGCTACCCAGCGTTTCC 148768 Query 69 C-TTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 | |||| | | ||||||| ||| | || ||||| | | ||||||||||||||| | | Sbjct 148769 CATTGGAATGAGAACTGGTACACAATTGGCATGTCCTTTCAGGTCCTCTCGTACTATGAA 148828 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 ||| ||||||| || ||||| || |||||| ||||| ||||||||| || Sbjct 148829 AGGCTACTCTCAATGCTCTAACGCCTACACCGGATATGGACCAAACTGTCTCACG 148883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780788215288