Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1558 235 1e-59 seq1518 93.3 1e-16 >seq1558 Length=203828 Score = 235 bits (260), Expect = 1e-59 Identities = 303/411 (74%), Gaps = 29/411 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| |||| ||||||||||| | |||||||||| ||| | || ||||||||||||| Sbjct 38955 TTTACGACCCACAGGCCTTCTTCCTGCACGCGGCATTGCTCCGTC--GCTTGCGCCCATT 38898 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 38897 GCGAAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 38838 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTA-CCCCGCC 183 ||||| |||||||||||||||||||| | |||| |||| || |||| ||| |||| || Sbjct 38837 GGCTGATCATCCTCTCAGACCAGCTACTGCTCGTGGCCTTGGGAGGCCGTTACCCCCACC 38778 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| | | | | | || | || | | ||| || Sbjct 38777 AACTAGCTAATCAGACGCAAGCCCCT-CTATCG--------GCGGTTTTTCACCT-TTCA 38728 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 || | | | |||| ||||||||| || |||||| ||||||||||||| ||| Sbjct 38727 CTCCT-CAGCTGTATGGGGTATTAGCAACAGTTTCCCAATGTTATCCCCCTCCGATAGGT 38669 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 || ||| | | |||| ||||||| ||||||| || ||| ||||| | Sbjct 38668 AGGTTCTTACGCGTTACGCACCCGTTCGCCACT--ACA---------CAAATTGCTT--T 38622 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | |||||||||||||||||||| || |||||||||||||| ||||| Sbjct 38621 GCT--CGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCGTCCTGAG 38573 Score = 235 bits (260), Expect = 1e-59 Identities = 303/411 (74%), Gaps = 29/411 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||| |||| ||||||||||| | |||||||||| ||| | || ||||||||||||| Sbjct 155248 TTTACGACCCACAGGCCTTCTTCCTGCACGCGGCATTGCTCCGTC--GCTTGCGCCCATT 155305 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 155306 GCGAAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 155365 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTA-CCCCGCC 183 ||||| |||||||||||||||||||| | |||| |||| || |||| ||| |||| || Sbjct 155366 GGCTGATCATCCTCTCAGACCAGCTACTGCTCGTGGCCTTGGGAGGCCGTTACCCCCACC 155425 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| | | | | | || | || | | ||| || Sbjct 155426 AACTAGCTAATCAGACGCAAGCCCCT-CTATCG--------GCGGTTTTTCACCT-TTCA 155475 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 || | | | |||| ||||||||| || |||||| ||||||||||||| ||| Sbjct 155476 CTCCT-CAGCTGTATGGGGTATTAGCAACAGTTTCCCAATGTTATCCCCCTCCGATAGGT 155534 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 || ||| | | |||| ||||||| ||||||| || ||| ||||| | Sbjct 155535 AGGTTCTTACGCGTTACGCACCCGTTCGCCACT--ACA---------CAAATTGCTT--T 155581 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | |||||||||||||||||||| || |||||||||||||| ||||| Sbjct 155582 GCT--CGTTCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCGTCCTGAG 155630 >seq1518 Length=1033048 Score = 93.3 bits (102), Expect = 1e-16 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 111 CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGG 170 |||||| |||||||||||| |||||||||||||||||||| |||||| |||| || | Sbjct 674557 CTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTGGCCTTGGGAAG 674498 Query 171 CCATTA-CCCCGCCAACTAGCTAATC 195 || ||| |||| |||| ||||||||| Sbjct 674497 CCGTTACCCCCACCAATTAGCTAATC 674472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222380955008