Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1558 304 4e-80 seq1518 104 7e-20 >seq1558 Length=203828 Score = 304 bits (336), Expect = 4e-80 Identities = 276/343 (80%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGG-TAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||||||||||||| || ||||||| | ||||||| |||| ||||||| | Sbjct 38760 GCGTCTGATTAGCTAGTTGGTGGGGGTAACGGCCTCCCAAGGCCACGAGCAGTAGCTGGT 38819 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 38820 CTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 38879 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||| ||||| || | |||||||| |||| || | ||||| |||||||| || || Sbjct 38880 CAGTGAGGAATTTTTCGCAATGGGCGCAAGC--GACGGAGCAATGCCGCGTGCAGGAAGA 38937 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| |||||||||| || | |||| ||||| | |||||||| |||||| Sbjct 38938 AGGCCTGTGGGTCGTAAACTGCTTTTCTCAGAGAAGAAGTTCTGACGGTATCTGAGGAAT 38997 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| |||||||||| |||||||||||||||||||||| |||| || |||||| |||| Sbjct 38998 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTCCG 39057 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | |||||||||| || |||||||| | | ||||| Sbjct 39058 CAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTCGTAAAGTC 39099 Score = 304 bits (336), Expect = 4e-80 Identities = 276/343 (80%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGG-TAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||||||||||||| || ||||||| | ||||||| |||| ||||||| | Sbjct 155443 GCGTCTGATTAGCTAGTTGGTGGGGGTAACGGCCTCCCAAGGCCACGAGCAGTAGCTGGT 155384 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 155383 CTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 155324 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||| ||||| || | |||||||| |||| || | ||||| |||||||| || || Sbjct 155323 CAGTGAGGAATTTTTCGCAATGGGCGCAAGC--GACGGAGCAATGCCGCGTGCAGGAAGA 155266 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| |||||||||| || | |||| ||||| | |||||||| |||||| Sbjct 155265 AGGCCTGTGGGTCGTAAACTGCTTTTCTCAGAGAAGAAGTTCTGACGGTATCTGAGGAAT 155206 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| |||||||||| |||||||||||||||||||||| |||| || |||||| |||| Sbjct 155205 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTCCG 155146 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | |||||||||| || |||||||| | | ||||| Sbjct 155145 CAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTCGTAAAGTC 155104 >seq1518 Length=1033048 Score = 104 bits (114), Expect = 7e-20 Identities = 79/92 (86%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGG-TAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||||||| ||||| || ||||||||| ||||||| |||||||||||| | Sbjct 674466 GCGTCTGATTAGCTAATTGGTGGGGGTAACGGCTTCCCAAGGCCACGATCAGTAGCTGGT 674525 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAG 251 |||||||| ||||| |||||| ||| |||||| Sbjct 674526 CTGAGAGGATGATCAGCCACACTGGGACTGAG 674557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497576667392