Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1558 293 6e-77 >seq1558 Length=203828 Score = 293 bits (324), Expect = 6e-77 Identities = 309/405 (76%), Gaps = 10/405 (2%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| |||||||||| |||||||||||||||||||||| |||| || ||| Sbjct 38990 TGAGGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGC 39049 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 ||| |||| ||| | ||||||||||| || |||||||| | | ||||| | || ||| Sbjct 39050 GTTGTCCGCAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTCGTAAAGTCTAATGTCAAA 39109 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAA-ACTGCAGGGCTAGAGTGCAGGAGGGGC 183 | | ||||||||| || | || || || ||| | ||| |||| | | |||||| Sbjct 39110 TACCAGGGCTCAACCTTGGACCGGCATTGGAGTACTCACGAGCTTGAGTACGGTAGGGGC 39169 Query 184 AAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGA 243 | |||||||| ||| |||||||||||||||||| || ||||||||||||||||||| Sbjct 39170 AGAGGGAATTCCATGTGGAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGA 39229 Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 ||||| |||||| | | ||||||||||||| ||||||| ||||||| || ||||| Sbjct 39230 AGGCGCTCTGCTGGGCCGAAACTGACACTGAGAGACGAAAGCTGGGGGAGCGAATAGGAT 39289 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTG 363 |||||||||| ||||||| ||||||||| ||| | |||| ||| | || ||| Sbjct 39290 TAGATACCCTAGTAGTCCCAGCCGTAAACTATGGAGACTAAGTGCTGCCGC----AAG-- 39343 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | |||| | ||| ||||| ||||| | || ||||||||||| Sbjct 39344 ---CAGTGCTGTAGCTAACGCGTTAAGTCTCCCGCCTGGGGAGTA 39385 Score = 293 bits (324), Expect = 6e-77 Identities = 309/405 (76%), Gaps = 10/405 (2%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| |||||||||| |||||||||||||||||||||| |||| || ||| Sbjct 155213 TGAGGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGC 155154 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 ||| |||| ||| | ||||||||||| || |||||||| | | ||||| | || ||| Sbjct 155153 GTTGTCCGCAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTCGTAAAGTCTAATGTCAAA 155094 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAA-ACTGCAGGGCTAGAGTGCAGGAGGGGC 183 | | ||||||||| || | || || || ||| | ||| |||| | | |||||| Sbjct 155093 TACCAGGGCTCAACCTTGGACCGGCATTGGAGTACTCACGAGCTTGAGTACGGTAGGGGC 155034 Query 184 AAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGA 243 | |||||||| ||| |||||||||||||||||| || ||||||||||||||||||| Sbjct 155033 AGAGGGAATTCCATGTGGAGCGGTGAAATGCGTAGAGATATGGAGGAACACCAGTGGCGA 154974 Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 ||||| |||||| | | ||||||||||||| ||||||| ||||||| || ||||| Sbjct 154973 AGGCGCTCTGCTGGGCCGAAACTGACACTGAGAGACGAAAGCTGGGGGAGCGAATAGGAT 154914 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTG 363 |||||||||| ||||||| ||||||||| ||| | |||| ||| | || ||| Sbjct 154913 TAGATACCCTAGTAGTCCCAGCCGTAAACTATGGAGACTAAGTGCTGCCGC----AAG-- 154860 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | |||| | ||| ||||| ||||| | || ||||||||||| Sbjct 154859 ---CAGTGCTGTAGCTAACGCGTTAAGTCTCCCGCCTGGGGAGTA 154818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203181254144