Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1163 347 2e-93 seq1536 293 4e-77 seq1540 152 1e-34 >seq1163 Length=8794 Score = 347 bits (384), Expect = 2e-93 Identities = 265/310 (85%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||| | |||||||||||| ||| ||| |||| ||||| |||||||| Sbjct 7826 GAACGAGACCTCAGCCTGCTAAATAGTCAGCATCGCACCTGCGGTGCGCCGACTTCTTAG 7767 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| ||| | |||| |||||||| |||||| |||||||||||||||||||||| Sbjct 7766 AGGGACTATTGGCGTTTAGCCAATGGAAGTATGAGGCGATAACAGGTCTGTGATGCCCTT 7707 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| Sbjct 7706 AGATGTTCTGGGCCGCACGCGCGCTACACTGACGCGACCAACGAGCCTATC--CTTGGCC 7649 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | ||| | |||||||||||| || | | |||||| |||||||||| |||||||||||| Sbjct 7648 GAGAGGCCCGGGTAATCTTGTAAACCGC-GTCGTGATGGGGATAGATTATTGCAATTATT 7590 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 7589 AGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCT 7530 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 7529 GCCCTTTGTA 7520 >seq1536 Length=1886782 Score = 293 bits (324), Expect = 4e-77 Identities = 206/233 (88%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 96 AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCA 155 |||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1697003 AGCCAATGGAAGTATGAGGCGATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCA 1696944 Query 156 CGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATC 215 |||||||||||||||| |||||||| ||| |||||||| ||| | |||||||| Sbjct 1696943 CGCGCGCTACACTGACGCGACCAACGAGCCTATC--CTTGGCCGAGAGGCCCGGGTAATC 1696886 Query 216 TTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275 |||| || | | |||||| |||||||||| |||||||||||| ||||||||||||||| Sbjct 1696885 TTGTAAACCGC-GTCGTGATGGGGATAGATTATTGCAATTATTAGTCTTCAACGAGGAAT 1696827 Query 276 GCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 1696826 GCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 1696774 >seq1540 Length=2046089 Score = 152 bits (168), Expect = 1e-34 Identities = 103/114 (90%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 215 CTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAA 274 ||||| || | | |||||| |||||||||| |||||||||||| |||||||||||||| Sbjct 31872 CTTGTAAACCGC-GTCGTGATGGGGATAGATTATTGCAATTATTAGTCTTCAACGAGGAA 31814 Query 275 TGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 31813 TGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 31760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947185242624