Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1558 192 2e-46 seq1557 77.0 1e-11 >seq1558 Length=203828 Score = 192 bits (212), Expect = 2e-46 Identities = 394/574 (69%), Gaps = 24/574 (4%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACA---GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58 |||||| ||| |||||| | ||| || | | |||||||| || |||||||| | Sbjct 42481 CGAGTCTGAATAGGGCGCAAATGGTCACTTCTTATGGACCCGAACCCGGGTGATCTATTC 42540 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||||||||||||||| | |||||||| |||||||||||||| || |||||||||| Sbjct 42541 ATGGCCAGGATGAAGCTTGGGTAACACCAAGTGGAGGTCCGAACCGACCGATGTTGAAAA 42600 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 || | |||||||||||| |||||| |||| | || | |||| ||| ||||||| || Sbjct 42601 ATCGGCGGATGAGCTGTGAATAGGGGAGAAATTCCAATCGAACTCGGAGCTAGCTGGATC 42660 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTAT-CACCATC-GGGGGTAGAGC-ACTGT 235 || |||||| || ||| || || || || || |||||| ||| ||||| Sbjct 42661 TCCCCGAAATGCGTTGAGGCGCAGCGGTAACGATGAACTGTCTTGGGGTAAAGCTACTGT 42720 Query 236 TATGGCTAGGGG--GTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAG 293 | | | | ||| | | ||| |||||| | | |||||||| |||| | || Sbjct 42721 T-TCGATGCGGGCTGCGAAAGCG--GTACCAAGTCGTGGCAAACTCAGAATACAAGACAT 42777 Query 294 TTTTACCG--CGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATC 351 | | ||| |||||| |||| | |||| | | | | ||||| || | | Sbjct 42778 GTCTTCCGTAAACCAGTGAGACAGTGGGGGATAAGCTTCATTGTCAAGAGGGAAACAGCC 42837 Query 352 CGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCT 411 | || | ||||||||||||| ||||| |||||| || || || || || |||| Sbjct 42838 CAGATCACCAGCTAAGGCCCCTAAATGGTCACTAAGTGGAA--AAGGATGTGAGAATGCT 42895 Query 412 AAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471 | ||| | |||| ||| |||| |||||||||| | || ||||||||||||| |||||| Sbjct 42896 GAAACAACCAGGAGGTTTGCTTAGAAGCAGCCA-CCCTTCAAAGAGTGCGTAATAGCTCA 42954 Query 472 CTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGG 531 || || || || ||| |||||| |||| | ||||| || ||||||| ||| Sbjct 42955 CTGGTAAAGCGTTCTTGCGCCGATAATGGCCGGG-ACTAAGTGACCTGCCGAAGCTGTGA 43013 Query 532 GATCATTTAT-------ATGATCGGTAGGGGAGC 558 || |||||| || || ||||||||||| Sbjct 43014 TATAATTTATTATATAAATTATAGGTAGGGGAGC 43047 Score = 192 bits (212), Expect = 2e-46 Identities = 394/574 (69%), Gaps = 24/574 (4%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACA---GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58 |||||| ||| |||||| | ||| || | | |||||||| || |||||||| | Sbjct 151722 CGAGTCTGAATAGGGCGCAAATGGTCACTTCTTATGGACCCGAACCCGGGTGATCTATTC 151663 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||||||||||||||| | |||||||| |||||||||||||| || |||||||||| Sbjct 151662 ATGGCCAGGATGAAGCTTGGGTAACACCAAGTGGAGGTCCGAACCGACCGATGTTGAAAA 151603 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 || | |||||||||||| |||||| |||| | || | |||| ||| ||||||| || Sbjct 151602 ATCGGCGGATGAGCTGTGAATAGGGGAGAAATTCCAATCGAACTCGGAGCTAGCTGGATC 151543 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAGTAT-CACCATC-GGGGGTAGAGC-ACTGT 235 || |||||| || ||| || || || || || |||||| ||| ||||| Sbjct 151542 TCCCCGAAATGCGTTGAGGCGCAGCGGTAACGATGAACTGTCTTGGGGTAAAGCTACTGT 151483 Query 236 TATGGCTAGGGG--GTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAG 293 | | | | ||| | | ||| |||||| | | |||||||| |||| | || Sbjct 151482 T-TCGATGCGGGCTGCGAAAGCG--GTACCAAGTCGTGGCAAACTCAGAATACAAGACAT 151426 Query 294 TTTTACCG--CGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATC 351 | | ||| |||||| |||| | |||| | | | | ||||| || | | Sbjct 151425 GTCTTCCGTAAACCAGTGAGACAGTGGGGGATAAGCTTCATTGTCAAGAGGGAAACAGCC 151366 Query 352 CGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCT 411 | || | ||||||||||||| ||||| |||||| || || || || || |||| Sbjct 151365 CAGATCACCAGCTAAGGCCCCTAAATGGTCACTAAGTGGAA--AAGGATGTGAGAATGCT 151308 Query 412 AAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCA 471 | ||| | |||| ||| |||| |||||||||| | || ||||||||||||| |||||| Sbjct 151307 GAAACAACCAGGAGGTTTGCTTAGAAGCAGCCA-CCCTTCAAAGAGTGCGTAATAGCTCA 151249 Query 472 CTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGG 531 || || || || ||| |||||| |||| | ||||| || ||||||| ||| Sbjct 151248 CTGGTAAAGCGTTCTTGCGCCGATAATGGCCGGG-ACTAAGTGACCTGCCGAAGCTGTGA 151190 Query 532 GATCATTTAT-------ATGATCGGTAGGGGAGC 558 || |||||| || || ||||||||||| Sbjct 151189 TATAATTTATTATATAAATTATAGGTAGGGGAGC 151156 >seq1557 Length=15758 Score = 77.0 bits (84), Expect = 1e-11 Identities = 81/107 (76%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| |||||||| ||||| || | ||||||| |||| |||||||||||||| Sbjct 11428 AGGACCGAACCCGTGTCTGTTGCAAGAGACTGGGATGACACGTGGCTAGGGGTGAAAGGC 11487 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTA 199 || ||| | || ||||||||||| ||| ||||| ||||| ||||| Sbjct 11488 CAATCAAGTTCGGTAATAGCTGGTTTTCTGCGAAATCTATTCAGGTA 11534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689573676032