Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1558 127 4e-27 seq1385 116 7e-24 >seq1558 Length=203828 Score = 127 bits (140), Expect = 4e-27 Identities = 176/243 (72%), Gaps = 9/243 (4%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||| ||| ||| | | || ||| ||||| || || | |||||| ||| |||| Sbjct 41843 GGTGGAGACCTAGGCACTCAGAGACGAAGAAGGGCGCAGATACCGGCGATACGCTTCGGG 41902 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| |||| || |||||||||| ||||| |||||| ||| |||| | | | Sbjct 41903 GAGCTGGCAA-CAAGCTTTGATCCGAAGATTCCCGAATAGGGCAACCT----CATAGA-- 41955 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | | | ||| ||||| || | || || ||| | | |||||||||||||||||| Sbjct 41956 -ACTACCTATATAATTCATAGTTAGGTAAGAGGCAACCCAGTGAACTGAAACATCTAAGT 42014 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||||| ||||||||||| ||| || ||||||| ||||| |||||||||| |||| || Sbjct 42015 AGCTGGAGGAAAAGAAAGCAAACGCGATTCCCGTAGTAGCGGCGAGCGAACCGGGAACAG 42074 Query 249 CCT 251 ||| Sbjct 42075 CCT 42077 Score = 127 bits (140), Expect = 4e-27 Identities = 176/243 (72%), Gaps = 9/243 (4%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||| ||| ||| | | || ||| ||||| || || | |||||| ||| |||| Sbjct 152360 GGTGGAGACCTAGGCACTCAGAGACGAAGAAGGGCGCAGATACCGGCGATACGCTTCGGG 152301 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| |||| || |||||||||| ||||| |||||| ||| |||| | | | Sbjct 152300 GAGCTGGCAA-CAAGCTTTGATCCGAAGATTCCCGAATAGGGCAACCT----CATAGA-- 152248 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | | | ||| ||||| || | || || ||| | | |||||||||||||||||| Sbjct 152247 -ACTACCTATATAATTCATAGTTAGGTAAGAGGCAACCCAGTGAACTGAAACATCTAAGT 152189 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||||| ||||||||||| ||| || ||||||| ||||| |||||||||| |||| || Sbjct 152188 AGCTGGAGGAAAAGAAAGCAAACGCGATTCCCGTAGTAGCGGCGAGCGAACCGGGAACAG 152129 Query 249 CCT 251 ||| Sbjct 152128 CCT 152126 >seq1385 Length=40102 Score = 116 bits (128), Expect = 7e-24 Identities = 175/243 (72%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 689 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 630 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 629 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACC------TTTCAAA 577 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| || ||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 576 C--TGC-TG-TGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 521 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 | | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 520 AACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 461 Query 249 CCT 251 ||| Sbjct 460 CCT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918385691328