Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq982 682 0.0 seq1556 452 1e-124 seq104 333 9e-89 seq1535 102 3e-19 seq1411 102 3e-19 >seq982 Length=8053 Score = 682 bits (756), Expect = 0.0 Identities = 478/538 (89%), Gaps = 11/538 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 278 CTTTTGTTCTACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 337 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 338 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACCTGGATC 397 Query 127 GGCCCGCGAAGGAC--CTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGT-TCCGCTTCA 182 | | || || | | |||| || |||| | || | | || || | ||| | | Sbjct 398 GACGTGCAAAAGCCGTCTTAGAGCTAGAAGCAGGGACAG---AGTCCCGCCTCCAAGTAA 454 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 | || ||||||||| |||| ||| ||||||||||||||| ||||||| ||||||| Sbjct 455 TGGAATAAGTAAAACAACGTTAAAAGTAGTGGTATTTCACCGTCGCCGAA---GCTCCCA 511 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 512 CTTATTCTACACCTCTTAAGTTATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 571 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 572 CTTCTTTCCCCGCTGTTTATTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 631 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 632 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 691 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 692 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 751 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTT 540 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 752 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACATC-CTTT 808 >seq1556 Length=6494944 Score = 452 bits (500), Expect = 1e-124 Identities = 333/383 (87%), Gaps = 10/383 (3%) Strand=Plus/Minus Query 47 CTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 973977 CTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 973918 Query 107 CAATGTCATCAACCCGGATCGGCCCGCGAAGGAC--CTTAACGCCAGAAA-ATGGTCGGT 163 ||||||| || ||| |||||| | || || | | |||| || |||| | || | | Sbjct 973917 CAATGTCTTCCACCTGGATCGACGTGCAAAAGCCGTCTTAGAGCTAGAAGCAGGGACAG- 973859 Query 164 GAAGACCAGT-TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCAC 222 || || | ||| | || || ||||||||| |||| ||| ||||||||||||||| Sbjct 973858 --AGTCCCGCCTCCAAGTAATGGAATAAGTAAAACAACGTTAAAAGTAGTGGTATTTCAC 973801 Query 223 TTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACT 282 ||||||| ||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 973800 CGTCGCCGAA---GCTCCCACTTATTCTACACCTCTTAAGTTATTTCACAAAGTCGGACT 973744 Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 973743 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGTTTATTCCAAGCCCGTTCCCTTGGC 973684 Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 973683 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 973624 Query 403 TCACTAATTAGATGACGAGGCAT 425 ||||||||||||||||||||||| Sbjct 973623 TCACTAATTAGATGACGAGGCAT 973601 >seq104 Length=1130 Score = 333 bits (368), Expect = 9e-89 Identities = 189/191 (99%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 60 Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 120 Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 121 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTC 180 Query 530 AACATCACTTT 540 |||||| |||| Sbjct 181 AACATC-CTTT 190 >seq1535 Length=1731330 Score = 102 bits (112), Expect = 3e-19 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 770089 TCCATTCATGCGCGTCACTAATCAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 770031 >seq1411 Length=43384 Score = 102 bits (112), Expect = 3e-19 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 389 TCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 42909 TCCATTCATGCGCGTCACTAATCAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 42851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635174523584