Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1558 237 5e-60 seq1557 86.0 2e-14 >seq1558 Length=203828 Score = 237 bits (262), Expect = 5e-60 Identities = 347/483 (72%), Gaps = 6/483 (1%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||||||||| ||| ||||||||| |||||| || Sbjct 44204 TCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTACACTCAATGTCTGATTTCC 44145 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||||||||||| |||||||||||| |||| ||||| || ||||||| Sbjct 44144 GTCCAGACTGAGGGAACCTTTGCACGCCTCCGTTACCTTTTAGGAGG-CATTCGCCCCAA 44086 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGATATCCA 179 |||||| |||||| | |||||| || ||| || || | |||| || | Sbjct 44085 ATAAACTGCCCACCTGAAACTGTCAAGGGTCCTGATTCAAGGATCCCCATTAGGATTCTA 44026 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 | ||||||||| | |||| ||| ||| | | | | | | |||||| Sbjct 44025 GCTCTTCCAGAGTGGTCTCTCAATGACGGCTCTAATTACCCCGGAAGGTAATCTTCATAG 43966 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 |||||||||| || | ||| || || ||||| ||||| || ||| ||| | | Sbjct 43965 CCTCCCACCTAGGCTGCGCAAGAAAAGCCCAAACCCAATTCCAAGATACAGTCAAGCTTC 43906 Query 300 CG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTG-CAATTTCAC 357 |||||||| |||| | | | | ||||||| || | | | ||||||| Sbjct 43905 ATAGGGTCTTTCTGTCCAGGTGTAGGTAGTCCGCATCTTCACGGGACAAGTCTATTTCAC 43846 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 || |||| | |||||||| | || |||||||||| ||||||||||||| |||||| Sbjct 43845 CGAGCCTCTCTCCGAGACAGC-GCCCAGATCGTTACGCCTTTCGTGCAGGTCGAAACTTA 43787 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 | |||||| |||||||||||||||||||| ||||||||||| ||||||||| || ||||| Sbjct 43786 CTCGACAATGAATTTCGCTACCTTAGGATCGTTATAGTTACGACCGCCGTTCACCGGGGC 43727 Query 477 TTC 479 ||| Sbjct 43726 TTC 43724 Score = 237 bits (262), Expect = 5e-60 Identities = 347/483 (72%), Gaps = 6/483 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||||||||| ||| ||||||||| |||||| || Sbjct 149999 TCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTACACTCAATGTCTGATTTCC 150058 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||||||||||| |||||||||||| |||| ||||| || ||||||| Sbjct 150059 GTCCAGACTGAGGGAACCTTTGCACGCCTCCGTTACCTTTTAGGAGG-CATTCGCCCCAA 150117 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGATATCCA 179 |||||| |||||| | |||||| || ||| || || | |||| || | Sbjct 150118 ATAAACTGCCCACCTGAAACTGTCAAGGGTCCTGATTCAAGGATCCCCATTAGGATTCTA 150177 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 | ||||||||| | |||| ||| ||| | | | | | | |||||| Sbjct 150178 GCTCTTCCAGAGTGGTCTCTCAATGACGGCTCTAATTACCCCGGAAGGTAATCTTCATAG 150237 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 |||||||||| || | ||| || || ||||| ||||| || ||| ||| | | Sbjct 150238 CCTCCCACCTAGGCTGCGCAAGAAAAGCCCAAACCCAATTCCAAGATACAGTCAAGCTTC 150297 Query 300 CG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTG-CAATTTCAC 357 |||||||| |||| | | | | ||||||| || | | | ||||||| Sbjct 150298 ATAGGGTCTTTCTGTCCAGGTGTAGGTAGTCCGCATCTTCACGGGACAAGTCTATTTCAC 150357 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 || |||| | |||||||| | || |||||||||| ||||||||||||| |||||| Sbjct 150358 CGAGCCTCTCTCCGAGACAGC-GCCCAGATCGTTACGCCTTTCGTGCAGGTCGAAACTTA 150416 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 | |||||| |||||||||||||||||||| ||||||||||| ||||||||| || ||||| Sbjct 150417 CTCGACAATGAATTTCGCTACCTTAGGATCGTTATAGTTACGACCGCCGTTCACCGGGGC 150476 Query 477 TTC 479 ||| Sbjct 150477 TTC 150479 >seq1557 Length=15758 Score = 86.0 bits (94), Expect = 2e-14 Identities = 79/99 (80%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCA-GGTCGGAACTTACCCGACAAGGAAT 429 |||||||| | ||||||| ||||||| |||| || || | ||| || |||||||| Sbjct 9783 GAGACAGCCCGACAGTCGTTCAGCCATTCATGCAAGGACGCCAATTAAACGTCAAGGAAT 9724 Query 430 TTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 ||||||||||||||| |||| |||||| ||||||||| Sbjct 9723 TTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTT 9685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702373476608