Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1558 143 6e-32 >seq1558 Length=203828 Score = 143 bits (158), Expect = 6e-32 Identities = 210/296 (71%), Gaps = 21/296 (7%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||| ||||||||| | || ||| || Sbjct 39026 GGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCCTCAGATACCGTCA------------- 38980 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 ||| || ||| || | ||||| ||||||| | || || ||||| |||| ||||| Sbjct 38979 -GAAC---TTCTTCTCTGAGAAAAGCAGTTTACGACCCACAGG-CCTTCTTCCTGCACGC 38925 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| || || || |||||| || |||||||||||||||||||||||| Sbjct 38924 GGCATTGCTCCGTCG--CTTGCGCCCATTGCGAAAAATTCCTCACTGCTGCCTCCCGTAG 38867 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| | Sbjct 38866 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGCT 38807 Query 241 CGTAGGCTAGGTGGGCCGTTA-CCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 ||| | || || |||||||| |||| || |||| ||||| ||||| ||| || Sbjct 38806 CGTGGCCTTGGGAGGCCGTTACCCCCACCAACTAGCTAATCAGACGCAAGCCCCTC 38751 Score = 143 bits (158), Expect = 6e-32 Identities = 210/296 (71%), Gaps = 21/296 (7%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||| ||||||||| | || ||| || Sbjct 155177 GGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCCTCAGATACCGTCA------------- 155223 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 ||| || ||| || | ||||| ||||||| | || || ||||| |||| ||||| Sbjct 155224 -GAAC---TTCTTCTCTGAGAAAAGCAGTTTACGACCCACAGG-CCTTCTTCCTGCACGC 155278 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| || || || |||||| || |||||||||||||||||||||||| Sbjct 155279 GGCATTGCTCCGTCG--CTTGCGCCCATTGCGAAAAATTCCTCACTGCTGCCTCCCGTAG 155336 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| | Sbjct 155337 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGCT 155396 Query 241 CGTAGGCTAGGTGGGCCGTTA-CCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 ||| | || || |||||||| |||| || |||| ||||| ||||| ||| || Sbjct 155397 CGTGGCCTTGGGAGGCCGTTACCCCCACCAACTAGCTAATCAGACGCAAGCCCCTC 155452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068783348096