Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1504 394 3e-107 seq1118 352 9e-95 seq982 279 2e-72 seq1163 235 2e-59 >seq1504 Length=634305 Score = 394 bits (436), Expect = 3e-107 Identities = 302/352 (86%), Gaps = 7/352 (2%) Strand=Plus/Plus Query 157 CCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 7497 CCGTCACCCGTTACCACCATGGTAGGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGA 7556 Query 217 AATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCAC 276 |||||||||||| ||||| ||| | || |||| |||||||| ||||||| |||| |||| Sbjct 7557 AATTTGAATGAAACATCGTCGGGACGAGCCCATACGATTCGTGAAGTTATCATGATTCAC 7616 Query 277 CAAGGAGCCCCGAAGGGC---GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGT 332 | | | | | || || | ||| ||||||||||||||||| ||||||| ||||| Sbjct 7617 CGCAG-GTCGGGCAGAGCCCGGCTGGCCTTTTATCTAATAAATACGACCCTTCCAGAAGT 7675 Query 333 CGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT 392 |||| || | ||| ||||||||||||||||||| |||||||||| |||||| ||||| Sbjct 7676 CGGG-TTGTGCGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGTA-GGTACC 7733 Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452 ||||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||| Sbjct 7734 ATCAAATAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTATAAGCAGTTTA 7793 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7794 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 7845 >seq1118 Length=8580 Score = 352 bits (390), Expect = 9e-95 Identities = 272/317 (86%), Gaps = 7/317 (2%) Strand=Plus/Minus Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGC 251 ||||||||||||||||||||||||||||||||||||| ||||| ||| | || |||| | Sbjct 1731 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGTCGGGACGAGCCCATAC 1672 Query 252 GATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC---GTTGGTTTTTTATC 308 ||||||| ||||||| |||| ||||| | | | | || || | ||| ||||||| Sbjct 1671 GATTCGTGAAGTTATCATGATTCACCGCAG-GTCGGGCAGAGCCCGGCTGGCCTTTTATC 1613 Query 309 TAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACC 367 |||||||||| ||||||| ||||||||| || | ||| ||||||||||||||||||| Sbjct 1612 TAATAAATACGACCCTTCCAGAAGTCGGG-TTGTGCGCACGTATTAGCTCTAGAATTACT 1554 Query 368 ACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||||||| |||||| ||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1553 ACGGTTATCCGAGTAGTA-GGTACCATCAAATAAACTATAACTGATTTAATGAGCCATTC 1495 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1494 GCAGTTTCACAGTATAAGCAGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 1435 Query 488 CATATGACTACTGGCAG 504 ||||||||||||||||| Sbjct 1434 CATATGACTACTGGCAG 1418 >seq982 Length=8053 Score = 279 bits (308), Expect = 2e-72 Identities = 225/266 (85%), Gaps = 7/266 (3%) Strand=Plus/Plus Query 243 AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGC---GTTGG 299 || |||| |||||||| ||||||| |||| ||||| | | | | || || | ||| Sbjct 7092 AGCCCATACGATTCGTGAAGTTATCATGATTCACCGCAG-GTCGGGCAGAGCCCGGCTGG 7150 Query 300 TTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||| ||||||| ||||||||| || | ||| ||||||||||| Sbjct 7151 CCTTTTATCTAATAAATACGACCCTTCCAGAAGTCGGG-TTGTGCGCACGTATTAGCTCT 7209 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 |||||||| |||||||||| |||||| ||||| ||||||||||| |||||||||||||| Sbjct 7210 AGAATTACTACGGTTATCCGAGTAGTA-GGTACCATCAAATAAACTATAACTGATTTAAT 7268 Query 419 GAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTT 478 ||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| Sbjct 7269 GAGCCATTCGCAGTTTCACAGTATAAGCAGTTTATACTTAGACATGCATGGCTTAATCTT 7328 Query 479 TGAGACAAGCATATGACTACTGGCAG 504 ||||| |||||||||||||||||||| Sbjct 7329 TGAGAAAAGCATATGACTACTGGCAG 7354 >seq1163 Length=8794 Score = 235 bits (260), Expect = 2e-59 Identities = 153/167 (92%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || | |||| |||| |||||||||||||||||| Sbjct 8629 GTACTCATTCCAATTACCAGACGCGAA-GCGCCCGGTATTGTTATTTATTGTCACTACCT 8687 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 8688 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATC 8747 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 ||||||||||||||||||||||||||||||||| | |||| |||||| Sbjct 8748 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTCACCCGT 8794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510376467968