Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1501 140 3e-28 >seq1501 Length=566706 Score = 140 bits (154), Expect = 3e-28 Identities = 131/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || || || ||||| ||| ||||||| || ||||| || || |||||| | Sbjct 384381 CATGAACAGGTCGGGGATCCACAGGCCGTAGAACAGGTCGCGGGCGCGCGCCTCCTCCTT 384322 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 |||||| || ||||||| ||| ||||| ||||| | |||||| ||||| || |||| ||| Sbjct 384321 GCCGTGGTTCTTGCGCAGGTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCATGTA 384262 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGC 66506 ||||||||| | |||| | || |||||||| || ||||| || |||| Sbjct 384261 GATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACATAGC 384215 Score = 104 bits (114), Expect = 2e-17 Identities = 323/495 (65%), Gaps = 9/495 (2%) Strand=Plus/Minus Query 65110 CTTGGTCCTAAGATAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCAT 65169 |||||| | || ||||||||||||||||||||||| ||||| || ||||| |||| Sbjct 386093 CTTGGTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAG 386034 Query 65170 CGATGATAATTTTGCATAATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATC 65229 ||| | | || || | || || |||| || || || || ||| ||||| || Sbjct 386033 CGAGGTCAGCTTGCCAAAGTTGGGGTCGGGCATGAACACGTTGAAGCTCTGGCTCTGGTC 385974 Query 65230 GATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACGTCCCGATATCTCCCAGAC 65289 ||||| || || || || |||||||| | | || | |||||||| || Sbjct 385973 AATGTAGGCGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCGCTGCTTGATCTCCCACAC 385914 Query 65290 GGTCTTGTACAGGCGACGTACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCA-- 65347 ||||||||||| | | ||| || |||||| | ||| | || || || Sbjct 385913 CGTCTTGTACAGCCCCTTGAGCTCCTCGGGGATCTCC---AGCTCCAGCACGGAGCCGTT 385857 Query 65348 CGACGTGCAATAATGCGAT-TACGCATCGACTCTGACCACAAACCCAAATCGATAAGATG 65406 || || || | || | | | ||| | ||||| | |||| | | || | Sbjct 385856 CGCCGC-CACCAGCTCGTTCTTCAGGTCGGCG--GACCAGATGCCCATGCGGTTCAGGTC 385800 Query 65407 TTGAACCAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGAT 65466 || | || ||| | |||| || ||||||||||||||| || || || || ||||| Sbjct 385799 GTGCAGCAGGTGCTGGTTGACCACGGTGAACTCGCCGGACAGCACGCGGCGCACGTAGAT 385740 Query 65467 GTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGT 65526 ||| || ||| ||| |||||| | || ||||||| || || || | || || || || Sbjct 385739 GTTCGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCGGT 385680 Query 65527 TGGCATGGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAA 65586 |||||||| || |||| || ||||| |||| |||| | | ||| || |||| Sbjct 385679 GGGCATGGGTGCCACCAGCAGCGAGTTGCGCACGCCGTGCTGCGCGATGCGGTTGCGCAG 385620 Query 65587 TTCGTCCCAGTTCCA 65601 || |||||||| || Sbjct 385619 CTCCTCCCAGTTGCA 385605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397560450929120