Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq1537 104 1e-16 seq1548 84.2 9e-11 >seq1537 Length=1995900 Score = 104 bits (114), Expect = 1e-16 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065 ||||||||||| ||| || | |||||||||||||||| |||||| | ||||| | || Sbjct 384317 GTCATGCGCGAGGGGAAGCCGTGCGGGTTCATGATGAGGTCGGGGCACACGCCGCGCTCG 384258 Query 449066 TTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGG 449125 ||||||| | |||||| | || | ||| ||||||||||| ||||| || Sbjct 384257 CTGAAGGGGAAGTCCTCCTGCCGCACGATGTTGCCCACCACGCCCTTCTGCCCGTGCCGA 384198 Query 449126 CTGCAGAACTTGTCCCCCTGCTCGGGC 449152 |||| ||||||||| ||| |||||||| Sbjct 384197 CTGCTGAACTTGTCGCCCAGCTCGGGC 384171 >seq1548 Length=2363170 Score = 84.2 bits (92), Expect = 9e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131 ||||| || |||||||||| | |||| ||||| ||||||||| || || || || Sbjct 1791518 GGCGTTGATGATCTCCTTGATACGCGGCACCCCCAGCGTCACGTTCATGCTGGCCACACC 1791459 Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTG 349185 || ||||||||||||| ||| |||| |||||| |||||||| ||| |||| Sbjct 1791458 CGCGAAGTGGAAGGTCTTGAGCGTCATCTGCGTACCCGGCTCGCCAATGGACTG 1791405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084696569689284